Gene Clim_1854 details

Gene Information

• Locus tag: Clim_1854
• ID: 6355195
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium limicola DSM 245
• Kingdom: Bacteria
• Replicon accession: NC_010803
• Strand: -
• Start bp: 2034417
• End bp: 2036249
• Gene Length: 1833 bp
• Protein Length: 610 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 642669458
• Product: DEAD/DEAH box helicase domain protein
• Protein accession: YP_001943872
• Protein GI: 189347343
• COG category: [J] Translation, ribosomal structure and biogenesis; [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG0513] Superfamily II DNA and RNA helicases

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTTCAA GCATTGTTAA TAATTTATTA CAGGAAAAGG ACAGTATGAT TGAAGAACAG 
CCATCCATTT TGAATTTCAG CAATTTAGAG CTTGCTGAAC CGTTGCTCAG AGCTCTTGAA 
GAGGTCGGGT ACGAAAAGCC TACTCCAATT CAGGCTCAAA CCATTCCGTT ACTTCTCGAA 
GGCCGGGACG TTCTCGGTCA GGCACAGACG GGTACCGGCA AGACCGCGGC TTTCGCGCTT 
CCGGTGCTTT CCAACATCGT GCTTTCGAAA ACCGAACCCC AGGCGCTGGT GCTGACTCCG 
ACAAGGGAGC TGGCCATTCA GGTTGCCGAG GCGTTTCACC GTTATGCCGA GTATCTGAAA 
GGGTTTCATG TGGTGCCGAT CTATGGTGGT CAGGATTACG GAACGCAGCT GCGCATGCTG 
AAGAGGGGCG TGCATGTGGT TGTGGGTACT CCGGGTCGCG TAATGGATCA TATGCGCCGC 
GGTTCCCTCT CATTGAGTTC TTTGCAGTGT CTGGTGCTTG ACGAGGCAGA CGAGATGCTT 
CGCATGGGCT TTATCGATGA TGTCGAGTGG ATACTCGATC AGACCCCGGA ATCCCGCCAG 
GTCGCTCTTT TTTCGGCAAC CATGCCTGCT CCGATTCGCC GTATTGCCCA GAAACATCTC 
AAGAGCCCCG CTGAAGTCAT CATTCAGAAT AAAACAACCA CGGTCGAGAC CATTCGTCAA 
CGGTACTGGA TTGTCGGCGG AAGCCATAAG CTCGATGTGC TGACCAGGAT TCTGGAATTC 
GAGCCGTTTG ACGGCATTCT TATTTTTGTC CGTACGAAAA CCATGACGCT CGAACTTGCC 
GAAAAACTGC AGGCAAGGGG ATATGCCGCT TCGGCGCTGA ACGGCGATAT GGCGCAGAAT 
CAGAGGGAGC GGACGGTGGA TCAGCTCAAG GATGGCTCGC TGAGCATCGT TATCGCTACC 
GATGTGGCTG CAAGAGGACT GGATGTCGAT CGCATCAGTC ATGTAATCAA TTACGATATA 
CCTTCGGATA CTGAGTCGTA CGTTCACCGG ATAGGGCGTA CAGGGCGTGC CGGAAGAAGC 
GGCGAAGCTA TTCTGTTCGT TTCTCCGAGA GAGAAAAATA TGCTCTATGC CATCGAAAAG 
GCGACCCGGA AACGGATCGA ACTGATGGAG CTTCCTTCGA CGGAGATTAT CAACGATAAA 
CGGGTTGCAA AGTTCAAGCA GCGTATTACC GATACCATTG CTGCCGAGGA TCTGGAGTTT 
TACACAAGAC TTCTTGAACA GTATTGCCGT GAGCATGATG TTACGGAGCT CGAGGCCGCG 
GCAGCTCTCG CTTCGATGTT TCAGGGCGAA ACTCCGCTTT TGCTCTCTTC GAAACCTGAG 
AGACCGGCTC GTCAGGAGGG GCGTGATCGT CCGGATAGCC GCGACCGTTC GGAAAGGGAT 
CGGGGCGCTT CGAGAAGCCC GAAAAGGGAT GGTCTGTATT CCGACGAAAG ACGGGAGAGC 
TACCGCATCG AGGTTGGCAG TACGCATGGC GTGAAACCGG GCAATATTCT TGGAGCGATT 
CTCAACGAGG TCGGTCTCGA TCCGGAAGCG GTCGGAAGAA TTACCGTAAA CGATACCTAC 
AGCACCGTGG AGCTGCCGGC AGGCATGCCG AACGAAGTGT TCCATGAAAT GCGCAAGGTG 
AGGGTGTGCG GACGTCAGCT GCGCCTTACG AAGTCCGAAG AGCGTTCCCA GAGCGGCTAT 
GCGGGCACAG GCAAGCGGAC AGGTTACAAG CCGAAATCGG ATTCAAAAAG CGAACCTTCT 
TATTTTACCG GTCATAAAAA GAAGCGGAAG TAA 

 

Protein sequence

MLSSIVNNLL QEKDSMIEEQ PSILNFSNLE LAEPLLRALE EVGYEKPTPI QAQTIPLLLE 
GRDVLGQAQT GTGKTAAFAL PVLSNIVLSK TEPQALVLTP TRELAIQVAE AFHRYAEYLK 
GFHVVPIYGG QDYGTQLRML KRGVHVVVGT PGRVMDHMRR GSLSLSSLQC LVLDEADEML 
RMGFIDDVEW ILDQTPESRQ VALFSATMPA PIRRIAQKHL KSPAEVIIQN KTTTVETIRQ 
RYWIVGGSHK LDVLTRILEF EPFDGILIFV RTKTMTLELA EKLQARGYAA SALNGDMAQN 
QRERTVDQLK DGSLSIVIAT DVAARGLDVD RISHVINYDI PSDTESYVHR IGRTGRAGRS 
GEAILFVSPR EKNMLYAIEK ATRKRIELME LPSTEIINDK RVAKFKQRIT DTIAAEDLEF 
YTRLLEQYCR EHDVTELEAA AALASMFQGE TPLLLSSKPE RPARQEGRDR PDSRDRSERD 
RGASRSPKRD GLYSDERRES YRIEVGSTHG VKPGNILGAI LNEVGLDPEA VGRITVNDTY 
STVELPAGMP NEVFHEMRKV RVCGRQLRLT KSEERSQSGY AGTGKRTGYK PKSDSKSEPS 
YFTGHKKKRK