Gene Clim_1507 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_1507 
Symbol 
ID6354823 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand
Start bp1622325 
End bp1625105 
Gene Length2781 bp 
Protein Length926 aa 
Translation table11 
GC content46% 
IMG OID642669112 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_001943537 
Protein GI189347008 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGGCT CGAAACAGTT CTGTTCGAAG GATACAGGAG ATGTGCCGTC TCGGGAATAC 
CTCGTTCAGC TGGCTTCTTC TGCAGAGCCA GGAGCTCAGG CAGAAGAACA GACTGGATTG
CAGAATCGGG ATGCCTATCT CCAGAGTATT CTGAGAGCGA TACCTTCGGG TATCGGTTTG
GTAGTAAATC GCGTTATTAA AGAAGTAAAC CTTCGGTTTT GCGAGATTCT CGGTTATACC
CGAGATGAAC TGGTCAATCA AAGTTCTCGC ATGCTCTATC TTTCTGATGA AGAATATGCG
TACGTAGGTG CTGAAAAATA TCGCCAGATA GCTCAATTCG GCTCAGGAAC CGTTGAGGTT
CGCATGCGGC GGAAAGACGG GCTTATCATC AATACGTTAC TGAGTTCCAC AACGATCGAT
TCTGACGATC TGTCTCAGGG GGTGACTTTT ACCGTTCTCG ATATTACGTC ACTCAAACAG
GCGGAAGCAA TGCTTCGCGA GAGCGAGGAA AAGTATCGCA GCCTGATAGA GCAATCGATA
CAGGGAATGA TCATTGCCCA GGACAATCCT CCGAGAGTCT GTTTTGCCAG CAAACCCATG
GCGGTTATTA TCGGCTATTC TCCTGCAGAG CTCACGAGCT TTTCTTCGAA GGAACTGCTT
GCTCTTGTTC ATCCGGATGA TCGGCAAAGC TATCGCAATG CATTTCATGA CTGCATCAAC
AGCCATCTGC AGCAGATTCG CAGAGAGTTC AGAATGGTAC ACAAAAACGG TAAGATTCGC
TGGGTCGAGT TATTCGGAAC AACCATTCTT TATGAAGGTG ATCCGGCGAT ACAGACCGTC
ATGGTCGATA TAACCGAACG GAAACATGCC GAAGAAGAAC TCGTGAAAAG CGGTGAGAAG
CTGAGCGAGC TTTTTGACAA TATCAGAGAT GGTCTTTTTG TGCACCCGGT GCTTGAGGGC
GGAGTTCCCG GAAAGTTTGA GATGGTAAAT CGTTCAGCAT CGGATATTCT TGGTTACTCG
GAACAGGAGC TTCTCAACAT GTCTCCGCAG GATATATATG CACCGGTATT TCCCTGTACC
GGAATTGACA GGGAGATTAC TCTGCTTAAT GAGCCAGGCA GTCAGATATT CGAGGCCGTT
CAGCGGCATA AAAACGGTAC AAGCGTTCCT GTTGAGGTAA GTACTGGCAG AATAGAGATA
TCCGGGAGGT CAAGCATCAT TTCGACTGTC CGCGATATCA CAACGAGAAA ACGCTCATAT
GAGGAGATGA AAAAAATTAC GACTGCATTA CAGCAGAGCC CTGCAGTTGT CGTTATTACC
AATGCACATG CTGAAATAGA ATATGTCAAT CCGAGATTCT CGGAGTTGAC CGGATTCGCA
GCTGAAGAGG TTTCAGGAAA AAACCCGAAG GTTCTCCAGT CGGGTTTGAT GTCAAAGGAG
ACCTACAGGC AGCTCTGGAT TACGCTGAAA GCCGGGAAAG TATGGCGTGG CGAATTTTTC
AATAAAAAGA AAAACGGAGA ACTCTATTGG GAAAACGCCA TTATCGCTCC GGTAAAAAAC
GAACAGGGTG ATATTACCAA TTATGTGGCC GTGAAAGAGG ATATAACCGA ACGGAAAAGG
CTGTGGAGTG AGCTTGTTGC GGCTAAGGAA AAAGCGGAGG AGAGCGACCG TCTGAAAACA
TGTTTTCTTG AGAATATGAG TCATGAGATT CGTACTCCGA TGAACGGGAT ACTCGGTTTT
TCTGAATTAT TGAAAGAGCC CCTGCTGGAT GGGAGTAAAA AGGACGAATA CATTGAACTC
ATTCATCAGA GCGGCAAGAG GATGCTCAGT ATCATCAATG ATCTTATCGA TATATCCAAA
ATCGAGGCGG GTGAGATTGC CATCCAGTAC ACGGAAGCGT CACTTGACAA AATTTTTCAT
GATCTTCAGG CATTTTTTGA GCCTCAGGCG ACAAGGAAAG GCTTATTGCT TCACTGCACC
GGATGCGTTC CGCCTTCTGC AAGTGTTATT GTTACCGATA AATCAAGACT TGTTCAGATA
CTTACGAATT TGGTTCAGAA TGCATTGAAA TATACTGCAT CAGGGGAAAT CTGTTTTGGA
TGCACTAAAA ATGGAGATTT TCTTGATTTT TATGTCAGAG ATACCGGAAT TGGCATTCCT
GATTTTTTGA CGGAAAAAAT ATTTGACCGT TTCCGGCAGG CTCAGGTTGA TCCCGTTCGT
GAATATGAAG GAGTCGGACT TGGTCTGAGT ATTTCAAAGT CTCTTGTAGA ACTTCTGGGA
GGGCGCATCG GTGTTCAGTC ATCGGCCGGA GAAGGGAGTG TGTTTTCATT TTCGTTGCCC
TACAACAGTG CGGTATCATT ACCAAAAGAA ATCAAGCAAG CCAAAAACCC TGGTAACCGT
ATTTTTAAAA AAAACTTAAC GATACTGGTC GCAGAAGATG ACAACGTCAA CCGGATACTG
CTTGAAAAAG TGCTGACCGG AAGCGGCATT GAAGTCATTT CGGTGATTGA TGGAATAAAA
GCCGTTCAGG CTGTCCATGA TCATCCGAAC ATAAACCTGG TGCTTATGGA TATAAAGATG
CCGAATATGA GCGGCTATGA GGCGTTACAG GAGATCAGGC AGTTCAGGCC TGCCCTGCCG
GTAATTGCCC ATACGGCTTT TGCATATCCC GAAGACAAAA GATATGCCCT GGAAGCCGGG
TTTAATGAAT TTCTTGCCAA GCCGTTTCGC ATGGATGATC TCTTCAACCT TATTCATCTT
TTCTCTGAAC ATGAATCCTG A
 
Protein sequence
MKGSKQFCSK DTGDVPSREY LVQLASSAEP GAQAEEQTGL QNRDAYLQSI LRAIPSGIGL 
VVNRVIKEVN LRFCEILGYT RDELVNQSSR MLYLSDEEYA YVGAEKYRQI AQFGSGTVEV
RMRRKDGLII NTLLSSTTID SDDLSQGVTF TVLDITSLKQ AEAMLRESEE KYRSLIEQSI
QGMIIAQDNP PRVCFASKPM AVIIGYSPAE LTSFSSKELL ALVHPDDRQS YRNAFHDCIN
SHLQQIRREF RMVHKNGKIR WVELFGTTIL YEGDPAIQTV MVDITERKHA EEELVKSGEK
LSELFDNIRD GLFVHPVLEG GVPGKFEMVN RSASDILGYS EQELLNMSPQ DIYAPVFPCT
GIDREITLLN EPGSQIFEAV QRHKNGTSVP VEVSTGRIEI SGRSSIISTV RDITTRKRSY
EEMKKITTAL QQSPAVVVIT NAHAEIEYVN PRFSELTGFA AEEVSGKNPK VLQSGLMSKE
TYRQLWITLK AGKVWRGEFF NKKKNGELYW ENAIIAPVKN EQGDITNYVA VKEDITERKR
LWSELVAAKE KAEESDRLKT CFLENMSHEI RTPMNGILGF SELLKEPLLD GSKKDEYIEL
IHQSGKRMLS IINDLIDISK IEAGEIAIQY TEASLDKIFH DLQAFFEPQA TRKGLLLHCT
GCVPPSASVI VTDKSRLVQI LTNLVQNALK YTASGEICFG CTKNGDFLDF YVRDTGIGIP
DFLTEKIFDR FRQAQVDPVR EYEGVGLGLS ISKSLVELLG GRIGVQSSAG EGSVFSFSLP
YNSAVSLPKE IKQAKNPGNR IFKKNLTILV AEDDNVNRIL LEKVLTGSGI EVISVIDGIK
AVQAVHDHPN INLVLMDIKM PNMSGYEALQ EIRQFRPALP VIAHTAFAYP EDKRYALEAG
FNEFLAKPFR MDDLFNLIHL FSEHES