Gene Clim_1064 details

Gene Information

• Locus tag: Clim_1064
• ID: 6353766
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium limicola DSM 245
• Kingdom: Bacteria
• Replicon accession: NC_010803
• Strand: +
• Start bp: 1166075
• End bp: 1168060
• Gene Length: 1986 bp
• Protein Length: 661 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 642668681
• Product: TonB-dependent receptor
• Protein accession: YP_001943112
• Protein GI: 189346583
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG4206] Outer membrane cobalamin receptor protein

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.00188221
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACAAAA AAGTATGCCT GCTTGTGCTG GCCGGGCTGC TCTGCAGCAG GGGGCTTCTT 
GCCGAAGAGA CGACGAAAAG CTTTACCGGC AGTGAACTGG TCGTTACCTC GAGCCGCGTC 
GAGGAAGAAA AGAAAAATGT AACAACGAAC ATTACCGTTA TCAGCAAAGA GGAGATCAAA 
CAGTCGTCGG CAAAGGATCT CGGAGACCTG CTTGCGGAAA AAAATCTCGG AACGGTCCAC 
AAATACCCTG GCACATTGAC AAGTATTGGA ATCAGGGGTT TCAGGACCGA GTCGCATGGC 
AATGATCTCC AGGGAAAAGT GCTCGTGCTT CTCAACGGCC GCAGGGCCGG CACCGGAAAC 
CTTGCCAAGA TTGCCGTTGG TGAGATCGAT CGTATCGAAA TTATTCACGG CCCGGCAGCG 
GTCCAGTATG GAACGGCAGC TATCGGAGGC GTTATCAATG TGATTACTGC AAGGGGATCC 
GGAGAACCCG GACTGTTTTT TGCTCAGGAG CTTGGCAGCA GCGATTATAC CCGGACAACG 
CTTGGTACAT CGGGCAAAAT CGGCAATCTT GATTTTTCAG GAAGCGTTTC GCTTTCTGAA 
ATGGGCGACT ATAAAACCGG ATCGGGAAAA ACATACTACA ACACGGCATA TGACGATCAG 
ACCTCCGGCA GCCTGAATAT CGGCTACGAG TTTACACCTG GGCACAGAGT CGGAGTGAAC 
TACACCTATT TTAATGTGGG TGATGGAGGT TCTCCTTACT ATTTGAGCCA GAACGATCTT 
GACGACTGGT TCGAGAAGGA GAATTATTCG ACGGATATCG TGTACGAGGG ACGGACTGCT 
GACAGCAGGT TATCCTGGAT GGCCAGATAT TTTACCGGTC GCGACTATGA TGTCCAGTAC 
GATCCGACCG GAAGCAACCA GGGTTGGGAT GATGATATCC CGTACACGTC CAAAGTCGAT 
CACAAGGGAG CCCAGGCACA GTTGACATAT AATTATGACT ATTTTCGTGC TACAGCAGGC 
ATAGACTGGC TCAATTACGA AGAGACCACG ACTCCTTATG CTCCGTATAA ATCGGAATAT 
GATAATATGG CGGAGTTTCT CCTGCTCAAT GGATTTCTAT TCGACAAACG GCTTGTACTC 
TCTGCTGGAT TTCGTTACGA TACGTATGAC TTGACCTCCC AGGGTTATGA GGATTCGTCT 
GAATCAGACC GCGATGATGA TAACTTCGTG ATGAATTACG GTGTTGCATG GCATGTAACT 
GATGGTATCA AACTGAGGGC ATCCTATGCT GAAGGGTTCA AGATGCCGGC ATCAAAGGAG 
CTGGCTGCAG ATTACTATAT TTCTACTACC CATTATGTCG GAAATGCCGA TCTCAAGCCT 
GAAGAGAGCA CAACCTGCGA AATCGGCGTT GATGTTGCCG ATAACCGGTT CGCTTCCTCG 
TTAACCTGGT TCACTACCGA TTTTAAAAAC AAGATTCAGT CGGTCAGTCT CGGGAGCGGC 
GTTTCGTCAT GGGAAAATCT TTACGGGGCA AAGATTTCAG GATTCGAAGG CGAAGTGTCG 
TATGCTTTTG AGCCGTTTGG CAACAACTGG CAGTTCAGCC CCTATGCCAG TTTTGTTTAT 
CTGACGGAAT TCGAGGACGA CGGAACAGGA GATCGTCTGC TCTATACTCC GGAATGGAAT 
GCTACTGTAG GTTTGAGGGT CAACGACCAG AGAGGATTCA GTGGTATGTT CAATCTTGCA 
TATACGGGAG AGTCGGATAT ACAGGATTGG GAGACGTCGT GGGCTGGAAC GGTAATTACA 
AAGGGCGGTT TTGCGGTTGC AAATCTGACT GCATCAAAAA AATTCATGCT CAGCGAAAAG 
AAAAGCGGTC GAGCTCTTAC AATCAAGGGG GAGGTCAACA ATCTCTTCGA TCGCGATTAC 
GAGTTCGTAA AGGGTTATCC GATGCCTGGC CGTTCGTTTG CCGTTGGCGT GAGGGTTGAT 
ATCTGA 

 

Protein sequence

MNKKVCLLVL AGLLCSRGLL AEETTKSFTG SELVVTSSRV EEEKKNVTTN ITVISKEEIK 
QSSAKDLGDL LAEKNLGTVH KYPGTLTSIG IRGFRTESHG NDLQGKVLVL LNGRRAGTGN 
LAKIAVGEID RIEIIHGPAA VQYGTAAIGG VINVITARGS GEPGLFFAQE LGSSDYTRTT 
LGTSGKIGNL DFSGSVSLSE MGDYKTGSGK TYYNTAYDDQ TSGSLNIGYE FTPGHRVGVN 
YTYFNVGDGG SPYYLSQNDL DDWFEKENYS TDIVYEGRTA DSRLSWMARY FTGRDYDVQY 
DPTGSNQGWD DDIPYTSKVD HKGAQAQLTY NYDYFRATAG IDWLNYEETT TPYAPYKSEY 
DNMAEFLLLN GFLFDKRLVL SAGFRYDTYD LTSQGYEDSS ESDRDDDNFV MNYGVAWHVT 
DGIKLRASYA EGFKMPASKE LAADYYISTT HYVGNADLKP EESTTCEIGV DVADNRFASS 
LTWFTTDFKN KIQSVSLGSG VSSWENLYGA KISGFEGEVS YAFEPFGNNW QFSPYASFVY 
LTEFEDDGTG DRLLYTPEWN ATVGLRVNDQ RGFSGMFNLA YTGESDIQDW ETSWAGTVIT 
KGGFAVANLT ASKKFMLSEK KSGRALTIKG EVNNLFDRDY EFVKGYPMPG RSFAVGVRVD 
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