| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_0824 |
|---|
| Symbol | |
|---|
| ID | 6353894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | - |
|---|
| Start bp | 906868 |
|---|
| End bp | 907527 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642668448 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
|---|
| Protein accession | YP_001942883 |
|---|
| Protein GI | 189346354 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCA AAGCTGTTAT ATTCGATCTT GACGGAACAC TGCTCGATAC GCTGGAAGAC
ATCATCAATA CCCTCAATTC CGTCCTTGAA TCCCACCGCT ACCCGACCCA CTCGCTTGAT
GAAGGAAAAT ATCTGGTAGG TCACGGCATG CGTGACCTCG TCAGAAAAGC GCTGCCGGAA
AATACCGCTA CGGAGCCGCT TATCGACGCA CTCCTCGTCG ATCTCATGAA CCATTACAGC
AGTAACTGGA ACCGCCATTC GAAACCGTAC CATGGCATAG CCGAAATGCT CGACGATCTC
ACGGTTCGCA GCATGAAAAA AGCCATTCTC TCTAACAAGG CAGACCGGTT CACGCAACTC
TGTGCAAAAG AGCTGCTTTC CAGCTGGACA TTCGACGTAG TGATGGGCCA TCACAGTGCC
ATACTCCACA AACCCGATCC GGCAGGAGCC CTGCTTGTCG CTCAAATACT GAAACATAAG
CCGGAAGAAA TTCTCTATGT AGGCGACAGC GGCATCGACA TGCAAACCGC ATCGCGTGCC
GGCATGTACC CGCTCGGAGT ACTCTGGGGA TTCAGACCAG CTGAAGAGTT GCTCGAATGC
GGAGCGAAAA CACTGGTGGA GAAGCCGGAA GAGATAACGA AGTTTCTGGG AACCGTATGA
|
|---|
| Protein sequence | MDFKAVIFDL DGTLLDTLED IINTLNSVLE SHRYPTHSLD EGKYLVGHGM RDLVRKALPE
NTATEPLIDA LLVDLMNHYS SNWNRHSKPY HGIAEMLDDL TVRSMKKAIL SNKADRFTQL
CAKELLSSWT FDVVMGHHSA ILHKPDPAGA LLVAQILKHK PEEILYVGDS GIDMQTASRA
GMYPLGVLWG FRPAEELLEC GAKTLVEKPE EITKFLGTV
|
|---|
| |