| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_0412 |
|---|
| Symbol | |
|---|
| ID | 6354407 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | + |
|---|
| Start bp | 456854 |
|---|
| End bp | 459055 |
|---|
| Gene Length | 2202 bp |
|---|
| Protein Length | 733 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642668043 |
|---|
| Product | (p)ppGpp synthetase I, SpoT/RelA |
|---|
| Protein accession | YP_001942484 |
|---|
| Protein GI | 189345955 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.563728 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGCAC AAATCGATAA AAAGCATTAC GAAAAACTGC ACGAAATTCT GCGTCTCTGC
CGCAGCAATC TTAAACACAG CGATGAATCA CTGATTCAGC GGGCGTTTTT TATGTGCTAC
AGGGCTCATG ATGGCGAGAA GCGGGCTTCG GGGGAACCGT ATTTCTATCA TCCGGTTGAA
GTTGCCACCA TCCTGCTCGA AGAGCTGCCG CTCGATGACG TATCCGTTGC TGCGGCACTG
CTGCACGATG TGATCGAAGA CAGCGGATAC ACCTATGAAG ATCTGGTAGC GGAACTCGGT
GTCGAGGTCG CCGATATCGT AGAAGGGCTG ACCAAGATAT CCGGAATCAT GATCAACCGG
GAAATTACCC AGGCCGAAGG GTTCCGCAAG ATGCTGCTCT CTATGGTCAA GGATATAAGG
GTTATTCTCA TCAAGTTCTG CGACCGGCTG CACAATATGA GAACGCTCGA ATCTCTGCCG
GAGCATCGCC GTCTGAAGAT AGCCCTTGAA ACGAGGGACA TTTATGCACC TCTGGCTCAT
CGTTTCGGTC TCGGCAAGAT GAAGGTCGAA TTCGAGAACC TCGCCCTGAA ATACATCGAT
CCCGAGATGT ACGAATTTCT TCAGCAGAAG ATAAAATTGA GCCGTGCGGA GCGCATCAAT
TATCTGAACA AGATGATTTC CCCTATCAAG GACGACCTTG AAAAACAGGG ATTCCGTATA
GAAGTCGAGG GACGGGCCAA GCACCTGTTC TCGATCTATA ACAAGATGCG TAACAAGAAC
AAGACCTTCG AGGATATTCA CGATCTCTAT GGTATCCGTG TTATTGTCGA TACCGAACGG
GTTGCCGAGT GTTTTGCGGT TTACGGATTC ATTACACAGA AATATCCGCC CATTCCCCAG
CACTTCAAGG ACTACATATC CATTCCCAAA CACAACGGGT ATCAGTCGCT CCATTCTGCC
ATCATAGGCC CCAAAGGGTA TGTGGTCGAG CTGCAGATCA GAACGACGCG CATGCATGAG
TTCGCCGAAC TTGGCGTTGC CGCGCACTGG AGGTACAAGG AGAAAATATC GAAGGATGAC
GCTTCGATTG ACTCGTTTCT GCGATGGGCC AGGGAACTGA TCAAGGATGC CGATTCGGCG
GCATCTTTCA TGGAGGGGTT CAAGCTCAAT CTCTATCACG ACGAGATCTA TGTTTTCACT
CCGAAAGGGG ATATGAAAAC CATGCCGGCA AGCGCCACTC CAATCGACTT TGCCTATGCC
ATTCACTCTG AAATAGGCAA TGGCTGTATC GGTGCGAAAG TCAACGGCAA GATCGTGCGT
CTGAACGCGC AGCTCAAGTC CGGAGACCGG GTGGAAATTA TCACGTCGAA AAACCAGAAG
CCGAAATCCG ACTGGCTCAA GTTTGTCGTC ACCCATCGCG CTCGTCTCAA AATCCGCTCG
GCCATCAATG AAGAGCGTCG CCTGCAGATA GAAAAAGGCC GCAGCATGTG GGAAAAACTG
CTTTCCGGCG GGAAAAAGCT TTTTTCCGAT AACGATATCA TTCGTCAGGC CAAAAAATAC
GGCATCAGAA CTCCTGCCGA TTTTTTCAGC GCGCTGGCCA GTCAGCAGAT CAGCGGCGAG
GAGATTTTCG AGCGGGTCAG CAATGCCCGC AAGGAGCCCC CGGAAGCCGG GGCAAAAGCT
TCCTCAAGCG AGGCAAAGCA GGTTGAGGAT TATCTGCAGC AGGCCCGCCA GGATCAGGAT
GCCCCGGTAT CGAAAAAGGA TGATGTGGTT ATCGCCGGCA TGACCAATAT CGCCTATGCA
TATGCGAAAT GCTGTCAGCC GGTTCCCGGA GACGACGTTA TCGGCTTCGT TACGGCCGAG
GGTCTGGTCA AAATACATCG AAAAAACTGC CTGAACGTCA GTAATGAAAA TCTGCTGAAA
AGCGAAAGGA TCGTTTCCGT TGCCTGGAAC AGAAAGGTAG AAACCGATTT TCTTGCCGGC
ATAAAAATTG TGGGCGAGGA CCGGATCGGC ATCACGAACC AGATAACCGC CGTGATTTCG
AAGTTCGATA CCAACATCCG CAGTATCTCG CTTCATGCCA GAGACGGCAT GTTTGTCGGT
ACGCTGATGG TCTATGTCCG CAACATCGAG AAGCTTGGAA CGCTTATGGA GAAACTGAAA
AAGGTTCAGG GCATTTTTAC GGTAGAGCGT CTGATAAGTT GA
|
|---|
| Protein sequence | MLAQIDKKHY EKLHEILRLC RSNLKHSDES LIQRAFFMCY RAHDGEKRAS GEPYFYHPVE
VATILLEELP LDDVSVAAAL LHDVIEDSGY TYEDLVAELG VEVADIVEGL TKISGIMINR
EITQAEGFRK MLLSMVKDIR VILIKFCDRL HNMRTLESLP EHRRLKIALE TRDIYAPLAH
RFGLGKMKVE FENLALKYID PEMYEFLQQK IKLSRAERIN YLNKMISPIK DDLEKQGFRI
EVEGRAKHLF SIYNKMRNKN KTFEDIHDLY GIRVIVDTER VAECFAVYGF ITQKYPPIPQ
HFKDYISIPK HNGYQSLHSA IIGPKGYVVE LQIRTTRMHE FAELGVAAHW RYKEKISKDD
ASIDSFLRWA RELIKDADSA ASFMEGFKLN LYHDEIYVFT PKGDMKTMPA SATPIDFAYA
IHSEIGNGCI GAKVNGKIVR LNAQLKSGDR VEIITSKNQK PKSDWLKFVV THRARLKIRS
AINEERRLQI EKGRSMWEKL LSGGKKLFSD NDIIRQAKKY GIRTPADFFS ALASQQISGE
EIFERVSNAR KEPPEAGAKA SSSEAKQVED YLQQARQDQD APVSKKDDVV IAGMTNIAYA
YAKCCQPVPG DDVIGFVTAE GLVKIHRKNC LNVSNENLLK SERIVSVAWN RKVETDFLAG
IKIVGEDRIG ITNQITAVIS KFDTNIRSIS LHARDGMFVG TLMVYVRNIE KLGTLMEKLK
KVQGIFTVER LIS
|
|---|
| |