| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_0363 |
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| Symbol | |
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| ID | 6354358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium limicola DSM 245 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010803 |
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| Strand | - |
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| Start bp | 401836 |
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| End bp | 405354 |
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| Gene Length | 3519 bp |
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| Protein Length | 1172 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642667994 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001942435 |
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| Protein GI | 189345906 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0898121 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATAA GCAATAACAA CAACGCTGAG TTAGGCAGTA AAGAGCATTT CTATGTAAAC
CGGCATACCA GAGCACTTTT TCATCAACAC GATCCGGGCT TTCTGCAGCT TCCTGCCGAT
ATGCACGAAA GTCAGCAGAA AGCCGATGAA CAATCAAAAA TTCTGACCCG TTCTCTATCT
GAACGTCAGC AGGAAGAGGT TGAGCCGATT CTTCCCGCAC AGTTTCACGG TATGAAACTG
CTCCATGAGG TGATGCACTT CGTACTGTCA AAAACCGTCG CACTCCGAAA TCCGGCTCTC
CTGGCAAATG TCAGAAAAAG CTTTGAGGAA TCGACACCGG AACAGAATAC CAGCAGGTAC
CTGCACCGTT TTCTCGAATC GTTTCCTCCC ATACAGATTT ACAACGGCTC TTTGAAAACA
GGCGAGTTTC TGGAGAATCC CGTAAACCGC GAACTGGTCA TCGAGGAATC CCTGCTGGTC
TGGCTCAACA ACCAGAATCC GGCTCTCGAC CGTTTTTCAT CGTTTATTTC CGACAGGCAT
CTCCGTGAGG AAACCGCTTA TCCGCAGCTT ATCAGGACAA TGCTGGAGGC CATGAAAGCT
ATGGGGCCGG CAGTATCGGA TAACATAGAT CTTGCCGAAC TGCTCACCAT GCCTATCAGG
CATGCCCCGA ACTCCATTCT CGACCAGTTG CGCTATATCC GCCTCAATTG GGCGGGATTG
CTTGAAGGAT CGCTCTTCTG GCCGCTCCTG ACCGAAGCCA TAGCATATAT TCAGGATGAA
GATCGCTACC TCTTTTTTGA AAATGTCGCA GCGTCGCATC AGGATAACCG GAAAGAAAGC
GGCTGGTTTG AAAAGGAAGC TCAAGCACCG GATTTCAGTT CGCTCGACAA TGCGCCGGCG
AACTACTCTC CGGATTCCTC ATGGATGCCG GAGGTGGTAA TGATCGCAAA AAGCACCTAT
GTCTGGCTCG ACCAGCTCAG CAAACAGTAC CGGCGGCACA TTGTGCGTCT TCAGGATATT
CCCGACGAGG AACTCGACAT CCTTGCAGAA CGAGGGTTCA CCTCGCTCTG GCTGATCGGA
CTCTGGCAGA GAAGTCCCGC ATCGCAGCAG ATCAAACAGA TTCAGGGTAA TCCCGAAGCC
AAGGCTTCAG CCTATGCTCT TGACCGGTAT GACATTGCCG ACGACCTCGG AGGATATGAG
GGGTATCTGA ATCTCCGGCA CCGGGCCATG CACAGAGGAA TCCGCCTCGC CAGCGACATG
GTGCCCAACC ATACGGGTCT CGATTCCGAT CTGGTAAAAA ATCAGCCCGA CTGGTTTCTC
TCTTCTCCCT GGCCGCCCTA TGTGAACTAC ACCTATAACG GCCCCAATCT CAGCAATGAT
CACCGCTACG GAATCTACAT TGAGGACGGT TACTGGAACC GATCGGATGC GGCAGTAACG
TTCAAGCGAG TCGATCACAT GAATGGAGAT ACCCGGTATA TCTATCATGG CAACGACGGA
ACCAATATGC CATGGAACGA TACCGCACAG CTGAATTTTC TCAGCCCCGA AGTACGGGAA
GGGGTGATCC AGCAGATACT GCATGTTGCC CGCATGTTCC CGGTTATCCG TTTCGATGCA
GCCATGGTGC TTGCAAAACG ACATATCCAG CGCCTCTGGT TCCCGCTTAC CGGCCATACG
GCGGCAATTC CTTCACGCTC CGCTTATGCG ATGAGCATGG CTGATTTCGA TGCCGCCATA
CCCGTCGAAT TCTGGCGCGA GGTGGTTGAC CGCGTTCAGA CCGAGGTTCC CGACACCCTG
CTGCTTGCCG AAGCCTTCTG GATGCTTGAA GGGTATTTTG TGCGCACGCT CGGCATGCAC
CGGGTGTATA ACAGCGCCTT CATGCACATG CTGAAAAAAG AGGATAATGC CGGCTATCGC
TACCTGATCA AAAACACGCT TGAATTCGAT GCGGAGATCC TGAAACGGTA TGTGAATTTC
ATGAACAACC CGGATGAAGA TACCGCCATT GCACAGTTCG GAAACGGCGA TAAATATTTC
GGCATCTGTC TGATGATGAT CACCCTGCCG GGCCTGCCGA TGTTCGGCCA TGGCCAGGTC
GAAGGTTTTA ACGAGAAATA CGGCATGGAA TATGCTAAGG CGTACTACGA TGAACAACCC
GACAACCACC TTGTCGAACG GCATTACCGG GAAATTTTTC CGGTAATGAA AAAACGTCCT
CTCTTCGCCG ATGTAAGACA TTTTTTCCTT TACGACGTCT ATGCTCCCGA AGTGACGGTC
AACGAGAATG TATTTGCCTA TTCCAACAGA ATCGGCGACG ACAGGGCTCT TTTCATCTAC
AACAACTGCA TCTCGCATGC CGACGGATGG GTCAAAACAT CCTCAGGATA TAAACAGAAC
GATGAAATCA GGCAGTCATC GCTTGTCGAA GGTCTGGGAC TGAACGCTGA AGAGCAGAGC
TATGTGGTAT TCAGAGAGCA TGCTTGCGGA CTTGAATTCG TGCGATCATG CAAAAAGCTT
GCCGAAGAAG GGCTCTATCT TTCTCTCGAC GGATACCGTT ACAATCTGTT TCTTGATTTC
CGGGAGGTTC GCCCCTCCAA GCTTCGGCCC TATGATGCGC TCTGCAATGA ACTTAACGGA
CAAGGGACGA TTTCAGTGGA ACATGCGGTA CTTTCCATGA GCCTCGCTCC GCTGCATGGC
ATCATTACCG GATTTCTCGA TTCGCCCCTG ATGACCACGC TGAGGGAACA GCCTTCGGAT
GAGAAGCAAG CCCTTTTGTT TGCCGAAGAA ATCGAAAAAC TGCTTGAGCA GGTAGCCTCG
GTGTTCGGCG ATCTGGTCGA TCAGAAGCTG ATGATTCCCG AAACCCTTGC AGCTGAAACC
GCATCTCTGT ACCGATCGGC AGGAAAATAT TTTGAAACCC TGGATAAAAC AACGGACAGC
GATGAGACGG CACAAGATCT CATGCTCGCA ACGGACTGGA TCATTCTTGA GTCACTGCAG
CAGATGCTCC TGTCGAACAC CCTCCTTGGC TCAAACCTCA TCGACGACTG GCTGATGCAC
GATGTGCTTG CAGCCCATTA CCGGAGCAAA GGGCTGACCG CCATTGCCGG CGGCACGGCG
GCCGATCTGC TCTGCTGCCT GCTCTCGACG CCGAAAGAGC AGAAGGGCGA AGATGCGGAA
CGTATCGTGC TGAACAGTCT CGAAAAGCTC TACAGAACAT GCAGAGGCTC GGTTGACCGG
TTGCTGCAGA TCGAATACCG GTTCGAAAAA GCATGGTTCC GCGAACAGGG ATTCACCATA
CTTGCCGCAT GGCTCAGGAC GGCTTCCAGA CTGCGGGAGA TAAACGCTCA GGGGGAAAAG
GAGCCTGTTG CGAGTTCCGC TGACACAACG GAAACGGAAA CGATGCAACA GCTCGAATTA
CGGGCCTTCC TCTCCGGATA TGAAATGGGA TCTTTCTTCA GCAGAGCACC GGAACATGTC
GCAAGAATGA ACAGCGAATT GCTTCCGGAA CATATCTGA
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| Protein sequence | MKISNNNNAE LGSKEHFYVN RHTRALFHQH DPGFLQLPAD MHESQQKADE QSKILTRSLS
ERQQEEVEPI LPAQFHGMKL LHEVMHFVLS KTVALRNPAL LANVRKSFEE STPEQNTSRY
LHRFLESFPP IQIYNGSLKT GEFLENPVNR ELVIEESLLV WLNNQNPALD RFSSFISDRH
LREETAYPQL IRTMLEAMKA MGPAVSDNID LAELLTMPIR HAPNSILDQL RYIRLNWAGL
LEGSLFWPLL TEAIAYIQDE DRYLFFENVA ASHQDNRKES GWFEKEAQAP DFSSLDNAPA
NYSPDSSWMP EVVMIAKSTY VWLDQLSKQY RRHIVRLQDI PDEELDILAE RGFTSLWLIG
LWQRSPASQQ IKQIQGNPEA KASAYALDRY DIADDLGGYE GYLNLRHRAM HRGIRLASDM
VPNHTGLDSD LVKNQPDWFL SSPWPPYVNY TYNGPNLSND HRYGIYIEDG YWNRSDAAVT
FKRVDHMNGD TRYIYHGNDG TNMPWNDTAQ LNFLSPEVRE GVIQQILHVA RMFPVIRFDA
AMVLAKRHIQ RLWFPLTGHT AAIPSRSAYA MSMADFDAAI PVEFWREVVD RVQTEVPDTL
LLAEAFWMLE GYFVRTLGMH RVYNSAFMHM LKKEDNAGYR YLIKNTLEFD AEILKRYVNF
MNNPDEDTAI AQFGNGDKYF GICLMMITLP GLPMFGHGQV EGFNEKYGME YAKAYYDEQP
DNHLVERHYR EIFPVMKKRP LFADVRHFFL YDVYAPEVTV NENVFAYSNR IGDDRALFIY
NNCISHADGW VKTSSGYKQN DEIRQSSLVE GLGLNAEEQS YVVFREHACG LEFVRSCKKL
AEEGLYLSLD GYRYNLFLDF REVRPSKLRP YDALCNELNG QGTISVEHAV LSMSLAPLHG
IITGFLDSPL MTTLREQPSD EKQALLFAEE IEKLLEQVAS VFGDLVDQKL MIPETLAAET
ASLYRSAGKY FETLDKTTDS DETAQDLMLA TDWIILESLQ QMLLSNTLLG SNLIDDWLMH
DVLAAHYRSK GLTAIAGGTA ADLLCCLLST PKEQKGEDAE RIVLNSLEKL YRTCRGSVDR
LLQIEYRFEK AWFREQGFTI LAAWLRTASR LREINAQGEK EPVASSADTT ETETMQQLEL
RAFLSGYEMG SFFSRAPEHV ARMNSELLPE HI
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