| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_0344 |
|---|
| Symbol | |
|---|
| ID | 6354338 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | - |
|---|
| Start bp | 379647 |
|---|
| End bp | 381623 |
|---|
| Gene Length | 1977 bp |
|---|
| Protein Length | 658 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642667974 |
|---|
| Product | putative NADPH-dependent glutamate synthase small subunit |
|---|
| Protein accession | YP_001942416 |
|---|
| Protein GI | 189345887 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAAC TGACGCTTGC CATAAACGGC CGGACAATTT CCGCAACTCC CGGCATGTCG
ATTCTTCAGG CTGCAGCATC TGCAGGAATC GCCATACCGA CGCTTTGTTT CGACAACACG
CTTGAATCCA CAGGCTCCTG CTGGATGTGC ATTGTGGAGA TCAAGGGGAA AAACCGGTTT
GTTCCGGCAT GCAGCACCGC AGTATCCGGC GGCATGGTTA TCGAAACGGA AAACAGAGAA
CTGCACGCCA TGCGGCGTCA GAGTCTGGAG CGCATCATCG ACCAGCACTG CGGCGACTGT
ATGGGGCCAT GCGAACTGTC ATGTCCGGCA GGCTGCAACA TTCCCGGCTT TATCGCAGAA
ATCGCCCGTC AGGACTACAG CGAAGCCATC AGAATAATCA AGGAGACGAT TCCTCTTCCG
GGAATTCTCG GCAGGGTGTG CCCCGCCCCA TGCGAAAACG AATGCCGTCG CCACGGTGTG
GATGAACCGG TTTCCATCTG CGCCCTGAAA CGGTATGCCG CCGACCACGA TATGGAATCG
GCCGACCGCT ATATTCCGGA AATGCGGGAC AAAACCGGAA AAACGGTTGC CGTTATCGGT
GCAGGGCCAG CCGGGCTGAC GGCAGCCTAT TACCTGCTCG CGCTTGGCCA TGACGTCACC
ATATTCGATG CCAACGAAGC TCCGGGCGGC ATGATGCGTT ACGGCATTCC CCGATTCCGG
CTGCCGGAAG AAGTTCTCGA CAAGGAAATC GAGCCGCTGC GGCTCATGGG AGCACGATTC
CGCATGAAAA CCGTTTTCGG AAAAGATATC ACCACGGCAT CGTTGCAAAA GGAGTTCGAC
GCTCTCTTTC TCGCTCTTGG AGCATCGAAA GCCTCTCTCA TGGGAATCCC CGGCGAAGAG
AGTCCCTCCG TTACAAGCGG CATAGATTTT CTGCACCATG CGGCTTCAGG AAACGCCATC
CATCCGGGAA AAAACGTGCT CGTCATAGGC GGAGGCAATA CCGCAGTCGA TGCCGCAAGG
ACAGCCCGAC GTCTCGGTGC CGAACAGGTC ACTATTCTCT ACCGCAGAAC GCGCAACGAG
ATGCCGGCGA ATCATGCCGA AATCGAGGAA GCGCTTTCTG AAGGAGTTGC CCTGCATGTG
CTTGCCGCTC CGACATCCAT CAGCACTTCC GAAGGCTCCG TCACCCTGAC CGCCGTGATC
ATGCAACAAG GTGAACCGGA TGAGAGCGGA AGGAGAAAAC CCGTTCCTGT TTCCGGCTCC
GAATTCACGA TAACCTGCGA CACCGTAATT TCCGCAACCG GACAGCAGGT TGAGTGCCCG
AAAGAGGATC TGGACGGAGT ATCCATCAGC AGGAACGGAA CGCTTGCCGT CGATCCGCAA
ACCCTGCAGA GCGGCGTTGC GTCGATATTC GCCGGAGGAG ACTGTGTTAC CGGAGCCGAT
ATTGCCATCC GCGCAGTGGA ACAGGGCAAA CGGGCGGCAT ATTTCATCGA CTGCTTTCTG
CTTGGAAAAA CACTTAAGGA GGAAGTTGTC GCATTCAACT CCTCCTACGG TCCCAGAGAT
CTGGCTCCGG CATCATTTTA CGAACGGGTG CAAACAGCAA ACAGGGTCCC CGTACCGGAA
ATAGCGCCGG AATCAAGAAC CGGAGGCTTC ATGGAAGTGG TTACCGGATT CAGTGAAACC
GATGCCGCCA CCGAAGCCGC AAGATGCCTG CAGTGCCGCT GCAAAGCCAT CGACACCTGC
CGGCTTCGTG ATCTCGCCGC ACGCTACCTT CCGGACTACA CATGCCGTCA GCAGGAACAT
CCGGAATTCA GTATTTCGGT AACACCGCAC ATACTTATTG AACGGGAAAA ATGCGTAGAC
TGTGGCATCT GCGTCAGAAC GCTTGAAGAG TGCCGGGCAG AACCGACTGC CGACTATCGC
AAACTGGCGG CCTCATGCCC GACGGGGGCG CTGAGCGAAC CGGGGAAATC CCGTTAG
|
|---|
| Protein sequence | MNELTLAING RTISATPGMS ILQAAASAGI AIPTLCFDNT LESTGSCWMC IVEIKGKNRF
VPACSTAVSG GMVIETENRE LHAMRRQSLE RIIDQHCGDC MGPCELSCPA GCNIPGFIAE
IARQDYSEAI RIIKETIPLP GILGRVCPAP CENECRRHGV DEPVSICALK RYAADHDMES
ADRYIPEMRD KTGKTVAVIG AGPAGLTAAY YLLALGHDVT IFDANEAPGG MMRYGIPRFR
LPEEVLDKEI EPLRLMGARF RMKTVFGKDI TTASLQKEFD ALFLALGASK ASLMGIPGEE
SPSVTSGIDF LHHAASGNAI HPGKNVLVIG GGNTAVDAAR TARRLGAEQV TILYRRTRNE
MPANHAEIEE ALSEGVALHV LAAPTSISTS EGSVTLTAVI MQQGEPDESG RRKPVPVSGS
EFTITCDTVI SATGQQVECP KEDLDGVSIS RNGTLAVDPQ TLQSGVASIF AGGDCVTGAD
IAIRAVEQGK RAAYFIDCFL LGKTLKEEVV AFNSSYGPRD LAPASFYERV QTANRVPVPE
IAPESRTGGF MEVVTGFSET DAATEAARCL QCRCKAIDTC RLRDLAARYL PDYTCRQQEH
PEFSISVTPH ILIEREKCVD CGICVRTLEE CRAEPTADYR KLAASCPTGA LSEPGKSR
|
|---|
| |