Gene Clim_0012 details

Gene Information

• Locus tag: Clim_0012
• Symbol: secD
• ID: 6354926
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium limicola DSM 245
• Kingdom: Bacteria
• Replicon accession: NC_010803
• Strand: +
• Start bp: 13548
• End bp: 15371
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 642667636
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001942099
• Protein GI: 189345570
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.000769208
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAATA AACCCTTCAA TCTTTTTCTG ATTGTTCTGG TAACGGTTGT GTCTCTATGG 
TCACTGTGGC CAACATGGCG TGATTACTCG TTATCGAAAC AGATAGACAG TTTTGCCTCA 
GGTGAAGACA GCCTGAAATT CAGCGTCAGC CATAGTGAAG AAATTGAAAA TGCACGTAAA 
AAAAGCCTCA AGCTTGGTCT CGATCTCAGA GGTGGTATGC ATCTTGTCAT GGAAGTCGAT 
CAGATAGATC TTTTCGAACA GAAAGCATGG AACAAGGATG CGCGTTTTCA TGCTATAATG 
GAAAGAGTCC GCAAGCTGTC CGCAAACAGT AATGCACAGG TTATCGATCT CCTTTCCGCG 
GAATTCGGAA AGGAGAACAT CAGGCTGAGC CGTTATTTCT ACGATATACG GAACAGCGAC 
AGGGAAATAA TCGGCAAGCT GCAAAAAGAG TCGGAAGATG CTCTCACCAG GGCAAGGGAG 
ATCATTCGCA ACCGTATAGA TCAGTACGGA GTTGCCGAAC CGGTGATAAC CACACAGGGC 
AGTCGCCGCA TCATTATCGA GCTTGCCGGC ATATCCGATG AAAATCGGGT GAGAAATCTG 
CTCAAAGGTA CGGCAAAACT TGAATTTAAA CTGTTGCGGG AACCGGAGGT TCTGCTGCGG 
GTACTCGACA AACTCAACTC GTCCCTTACT GCGCAAAGCG TCGTTTCCGC CCTTCCTGCT 
GTCGCCGATA CGGCCGGTGT GCTCCCGCCA GCTTCTGCTG CGGCGTCCAA ATCGGCCGGC 
CCGCTGTATG ATGTACTTAC CATTATGCAG AACGGTAACG TGTATGTTCC TGCCGAATCA 
AGGGAGTTTG TCGTCAAGCT GTTTCAGAGA AGCGATATCA AGGCGCTTAT CCCTCAGGAC 
AGCGAGCTGC TCCTTGCGGC AAAACCTGAT CAGCTTCAGG ACGGGCGTAA TTACTATCCT 
GTTTTTCTGC TCAGGAAAAC AGCTGAATTG ACGGGCGGGG TCATCACCGA AGCCAAAGCC 
TCTTTCAGTG CCGAAGGTGC TCAGCCGGAG GTACTCATGG AAATGAACTC CGAAGGTACT 
GCAAAGTGGG CCCGAATAAC AGGAGCCAAT ATCGGCAAAC GGGTAGCCAT TGTGCTTGAC 
GGTGCGGTTT ACAGCGCTCC GGTAGTTCAG TCGAAAATTC CAAACGGGAA CTCAGTTATC 
AATGGCATCG AGAGCGTTGA AGAGGCTAAA GACCTTGAAA TCGTTCTCAA AGCCGGCGCT 
CTGCCCGCAC CGGTCAGAAT CATCGAAGAG CGCACTGTGG GACCCTCACT TGGAGCCGAT 
TATATCAGGG CGGGGATGCT CTCTTTGCTA TGGGGTTTTC TGGCTGTGTC GGTTTTCATG 
CTGTTGTACT ATCATACAGC CGGTATCGCA GCCGATATGG CTCTGGTCCT GAACATCCTG 
GTCGTGCTTT CCGTGCTTGC GGGATTCAAT GCCTCACTCT CGCTTCCGGG TATTGCCGGA 
ATTGTGTTGA CCATGGGTAT GGCCGTCGAC GCAAACGTGC TGATATATGA GCGGATCAGA 
GAGGAACTCG CCGATGGGAA GTCGATTGTT TCGGCGGTTG CTGCCGGATA CGACAAGGCG 
TTCTCATCCA TTCTCGACTC GCATGTCACA ACGCTGGCGT CGGCATATCT GCTCTACACC 
TTCGGAATCG GTCCGATTCA GGGCTTTGCC GTTACCCTTA TGATCGGTAC GGCGGCAAGC 
CTGTTTACCG CTATTGTCGT GACGAAGGAG ATTTTCAATT TTATGCTTTC GAAAAACATG 
CTTTCAGAAA AGAGTTTCGG TTAA 

 

Protein sequence

MKNKPFNLFL IVLVTVVSLW SLWPTWRDYS LSKQIDSFAS GEDSLKFSVS HSEEIENARK 
KSLKLGLDLR GGMHLVMEVD QIDLFEQKAW NKDARFHAIM ERVRKLSANS NAQVIDLLSA 
EFGKENIRLS RYFYDIRNSD REIIGKLQKE SEDALTRARE IIRNRIDQYG VAEPVITTQG 
SRRIIIELAG ISDENRVRNL LKGTAKLEFK LLREPEVLLR VLDKLNSSLT AQSVVSALPA 
VADTAGVLPP ASAAASKSAG PLYDVLTIMQ NGNVYVPAES REFVVKLFQR SDIKALIPQD 
SELLLAAKPD QLQDGRNYYP VFLLRKTAEL TGGVITEAKA SFSAEGAQPE VLMEMNSEGT 
AKWARITGAN IGKRVAIVLD GAVYSAPVVQ SKIPNGNSVI NGIESVEEAK DLEIVLKAGA 
LPAPVRIIEE RTVGPSLGAD YIRAGMLSLL WGFLAVSVFM LLYYHTAGIA ADMALVLNIL 
VVLSVLAGFN ASLSLPGIAG IVLTMGMAVD ANVLIYERIR EELADGKSIV SAVAAGYDKA 
FSSILDSHVT TLASAYLLYT FGIGPIQGFA VTLMIGTAAS LFTAIVVTKE IFNFMLSKNM 
LSEKSFG