| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_1231 |
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| Symbol | ptmE |
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| ID | 7410395 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter lari RM2100 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012039 |
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| Strand | - |
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| Start bp | 1184993 |
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| End bp | 1186030 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 23% |
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| IMG OID | 643718357 |
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| Product | flagellin modification protein PtmE, putative sugar-phosphate nucleotide transferase |
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| Protein accession | YP_002575803 |
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| Protein GI | 222824229 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.00000208573 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGGCTA AAATTGATGA ATTAAAATTA AGAGCAAATT CTAGCATTAA AGATGCATTA
AATATCATAG GAAAATTAAG AGTTAGGCTT GGCATTGTTG TAGATGAAAA TGATGATTTA
TTAGGAATTA TTAGCGATTC AAATATTAGA AAAGCTTTAT TAAATGGATA TGATTTAAAT
GAAAGTATAG AAAAAATTTA TACTAAAAAT CCTATATTAG TTAGTGAAAA AACTAGCGAA
AAAGATTTAT TAAAATTAAG TGCTAAATAT GATATATATG ATTTTCCAAT AATAAATAAA
AATGGAAAAA TTATAAAAAT AAAATCCATT GCCTCTTTAC TTTGTAAAAA CAAAAATCCA
AATTATGTTA TTTTAATGGC AGGAGGTTTG GGAACTAGAT TAAAAGAACT TACCAAAAAT
ACTCCAAAAC CTATGTTAAA AGTAGGCAAT AAACCTATAC TTGAAACTAT AATTTCAAAA
TTTAATGAGC AAAATTTTGA AAATTTTATT TTTTGTGTAA ATTATAAAAA ACATATGATT
AAAAATCATT TTAAAAATGG TGAAAAATTT GGAGTAAATA TAAAATATGT TTGTGAAAAT
AAAAAGCTTG GCACAGCTGG GGCTTTGAGT TTGATAAATA AAGATTTAAA AGATAGTTTT
ATAGTGATGA ATGCTGATAT TTTAACTGAA CTTGATTTTA ACAAATTATT AAAAGCACAT
AAAAAAAGCA AAGCATTAAT GAGTGTGGTT CTTAGAGAAT ATAATCATCA AATTCCATTT
GGCGTAGTAG AATTAAAAAA TAAAAGTATA GTAAAAATTA CAGAAAAACC TACGCAAAAA
TTTTTAATAA GTGCTGGAAT ATATGTTTGT GAACCTTGTG TTTTAAATCT TTTAAAAGAA
AATGAATACC TTGATATGCC AAATTTAATA GAACTTATTA TGCAAAAAGG TAAGGTAAAT
TCATATATGC TTGATGATTA TTGGATTGAT ATAGGAAGAA TGGATGAGTT TTTAAAAGCA
AATAAGGAAT TTAAGTGA
|
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| Protein sequence | MKAKIDELKL RANSSIKDAL NIIGKLRVRL GIVVDENDDL LGIISDSNIR KALLNGYDLN
ESIEKIYTKN PILVSEKTSE KDLLKLSAKY DIYDFPIINK NGKIIKIKSI ASLLCKNKNP
NYVILMAGGL GTRLKELTKN TPKPMLKVGN KPILETIISK FNEQNFENFI FCVNYKKHMI
KNHFKNGEKF GVNIKYVCEN KKLGTAGALS LINKDLKDSF IVMNADILTE LDFNKLLKAH
KKSKALMSVV LREYNHQIPF GVVELKNKSI VKITEKPTQK FLISAGIYVC EPCVLNLLKE
NEYLDMPNLI ELIMQKGKVN SYMLDDYWID IGRMDEFLKA NKEFK
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