| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_1048 |
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| Symbol | secD |
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| ID | 7410782 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter lari RM2100 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012039 |
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| Strand | - |
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| Start bp | 1003383 |
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| End bp | 1004963 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 643718174 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_002575621 |
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| Protein GI | 222824047 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTAGTG GAAAAATTAC TTATAGAAGT ATTATTTTCT TTGTAGTTTT TCTTATAGGA
TTAATTTTTT CCATACCTTC TTTTATGCAA ACCCAAAGTG GTGCTAAGAT TAATCTAGGA
CTTGATTTGC AAGGTGGTTT GCATATGTTA TTAGGTGTAG AAGTAGAAGA GGCGGTTAAA
TCAAAGGTTA AATCCATAGC CTCTTCTCTT AGCTATTCTG TCAATAAAGA AGATATTATT
GTTGATAAAA TCAAAGTAAA TGATACTAGT ATTGAATTTA GTTTATTAGA TGAAAATGAT
GTAGCTAAGG TTGATTTGCT GTTAAAAGAC ATTAAAGGCT TGGCTATTAC ACACGAAAAT
TTACACTACA TACTTTCTTT AACCCAAGAA GAAATCAAAC TAACTCATGA ACAAGCTATT
TTGCAAGCTG TGGAAACCAT TAGAAATAGA CTTGATCAAT TTGGCCTTGC AGAACCAAAT
GTAGCAAGAT CAGGTGAGGA TAAAATTTTA GTTGAACTTC CAGGTATTAA GACTACTGCA
GATGAGGCTA GAGCTAGAGA ACTTATCGCA AAGGCTGCAC ATTTACAATT AATGGAAGTG
GATGATGTTA GAATGGATCA GGTAAATAAT CTTACTCCAG CCCAAGCTGC TGAATATGGA
GATTTGATTT TTGAAGATGC TAAAAATCCT CAAATTAAAT ATCTAGTAAA ATCTATACCT
ATTCTTGATG GTTCTATGCT AACAGATGCA AAAGTGGGTT TTGCGCAAAG TAATAATCTA
CCCGTGATTA ATTTTACCTT AAATTCAGAA GGTGCTAAAA AATTTGGAGA TTATACAGGA
AATAATGTAG GTAAACGCTT GGCTATAGTT TTAGATAATA AAGTATATTC AGCTCCAAGA
ATTAATGAAA GAATAGGCGG GGGTAGTGGC CAAATTAGTG GTAGTTTTAC CGTAGAAGAA
GCTCATGATG TGGCTATTGC TTTAAGAAGT GGGGCACTTT TAGCACCGGT TAAAATGCTT
GAAAAAAGAA GTGTTGGACC ATCTTTGGGT GCTGATAGTA TAAAAATGAG TATGATAGCT
CTAGCAGGTG CTTCTATATT GGTTATTGCA TTTATGGTGA TGTATTATGG TATAGCAGGA
ATTTTTGCTA ATATTGCTTT AGTGGCAAAT ATTTTAGTGA TTATTGCCAT AATGGCTATG
TTTGGAGCAA CTTTGACTTT ACCTGGTATG GCAGGACTTG TACTGACTGT GGGTATGGCA
GTAGATTCTA ATGTTATTAT TAATGAAAGA ATTAGGGAGT TATTGCGAGA AGGTGCCAGT
ATAAGGCAAA GTGTTGAAAA TGGCTATAAG CATGCAATGA GTGCTATTTT AGATGCAAAT
ATTACTTCAT TAATTACTTC AATAGTACTT TATGCTTATG GGACTGGTGC GGTAAAAGGT
TTTGCTGTTA CTTTAAGCAT TGGAATTTTA GTTTCAATGA TCACTTCTAT TGTTGGAACT
CATGGTATGT TTGAAATGTT TATGAACCGT ATGGAAAAAA GCAATAATAC AAGACTTTGG
TTTGGATATA GGAGACCTTA A
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| Protein sequence | MRSGKITYRS IIFFVVFLIG LIFSIPSFMQ TQSGAKINLG LDLQGGLHML LGVEVEEAVK
SKVKSIASSL SYSVNKEDII VDKIKVNDTS IEFSLLDEND VAKVDLLLKD IKGLAITHEN
LHYILSLTQE EIKLTHEQAI LQAVETIRNR LDQFGLAEPN VARSGEDKIL VELPGIKTTA
DEARARELIA KAAHLQLMEV DDVRMDQVNN LTPAQAAEYG DLIFEDAKNP QIKYLVKSIP
ILDGSMLTDA KVGFAQSNNL PVINFTLNSE GAKKFGDYTG NNVGKRLAIV LDNKVYSAPR
INERIGGGSG QISGSFTVEE AHDVAIALRS GALLAPVKML EKRSVGPSLG ADSIKMSMIA
LAGASILVIA FMVMYYGIAG IFANIALVAN ILVIIAIMAM FGATLTLPGM AGLVLTVGMA
VDSNVIINER IRELLREGAS IRQSVENGYK HAMSAILDAN ITSLITSIVL YAYGTGAVKG
FAVTLSIGIL VSMITSIVGT HGMFEMFMNR MEKSNNTRLW FGYRRP
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