Gene Cla_1008 details

Gene Information

• Locus tag: Cla_1008
• Symbol: cca
• ID: 7410743
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter lari RM2100
• Kingdom: Bacteria
• Replicon accession: NC_012039
• Strand: -
• Start bp: 961441
• End bp: 963375
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 27%
• IMG OID: 643718135
• Product: tRNA nucleotidyltransferase/formyltetrahydrofolate deformylase
• Protein accession: YP_002575582
• Protein GI: 222824008
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0788] Formyltetrahydrofolate hydrolase
• TIGRFAM ID: [TIGR00639] phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; [TIGR00655] formyltetrahydrofolate deformylase

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.00246463
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCAAAAAT TGAAGATAGA CTTAAAAAAT GATCAAGATT TTTTAAGAAT CAAAAACATA 
CTTAAACCTT ACACGCAAAG AGCTTATTTA GTAGGTGGCT GTGTAAGGAA TTCTTTTTTA 
GATTTATCTA GCGATGATTA TGATATAGAA ATTTATGATA TTGAGCCTCA AATTTTTGAT 
GATTTAATGC AAAAACTTGG CGCAAATGGG GTTGGGAAAA GTTTTTTTGT GTATAAATAC 
AAAAAATTTG ATTTAGCCCT AGCACGCTAT GAAAATAAAA TTTCTACAGG CCATAGAGGT 
TTTGAGGTTA AAGTTTGCAA TGATGAGCAA GAAGGAGCTA AAAGAAGGGA TTTTACCATT 
AATGCATTGA TGGTAAATAT TTTTGATTTT AAGTTTTTAG ATTTTTTTAA TGGTTTGCAA 
GATTTGCAAG CAAAGATTAT AAGACATATT GATGATAAAA GTTTTGTTGA AGATAGCTTA 
AGAGTGCTTC GTGGAATTTC TTTTGCATGC AGGTTTGATT TAACAATTGC AAGAGAAAGT 
TTAAAATTAA TGCAAACTAT GGATATAAGT GATTTATCTA AAGAGCGTAT TAATAATGAA 
CTTTATAAAA TTTTTAAAAC TTCAAGACTA AATAAAGCTT ATGAGTATTT CAAAATTTTA 
AATTTAGAAG AAAAAATATT TTTTTATCAA AGCCACAATA AAGAATTTGA AAGATTGTTA 
GAGCATAGTC AAAAATTAAT TTGTGATGAG GCTTTGTATT TATATTTGTA TTTGAATTTT 
TTTCGTATAA ATAAAGAGGA ATTTTTTAAA AAAACAAAAT TAAAAAAAGA ACTATTAAAA 
AAATGTGAAC AAGGATTTAT TTTAGGTAAA ATTGATGATT TTAATTTAGC TAAAATTGCT 
TTAAAAATTC CACTTTGCAA ATGGCTTGGG CTTTGGGATA ATGAGCGTAT AACACAAGCA 
AAAAAAATAA ATTTATATTA TCATACTTTT GAAAGTAAAA TTAGTGCCAA TGATTTGCTA 
AAGGAAGGAT TTAACGGGAA AGAGCTTGGA ATTGAGCTTG AAAAAAGAAG ATTACAAGAA 
TTAAAAAATT ATATAAAGGA GCAAAAAATG AAAGAATATA TTTTAAAAAT TTCATGTAGT 
GATGAAAAAG GATTGATTTA TAGAATTTCA GATGTTATTT TTAAATATAG AATCAATATT 
ATAAAAAATG ATGAATTTGT TGGAGAAAAT CGTTTTTTCT TTAGGGCGCA TTTGGAAGGT 
GAGCTTGATA TAAAAGCTTT TAAAGGTACG CTTGAAGCTA TGCTTCCTGA TAATGCGCAA 
ATTGAGATTA CACCTAAGAG AAAAAAAGAT ATTATTGTTT TAGCTACTAA AGAAACTCAT 
TGTTTAGGGG AATTGCTTAT TCGCCAATTT AGCGGGGAAT TTAATGCAAA TATAAAAGCA 
GTTATTGCAA ATTATGATAC TTTAAAACCT TTGGTGGATA AATTTAATAT ACCTTTTCAT 
GCTATTTTAG CTAAGGATTT AAGCAGGCAG GAGCATGAAG AAAAAATTTT GCAATGCTTA 
AAAGAGTATG AGTTTGATTA TATTGTTTTA GCAAAATATA TGAGAATTTT ATCGCCATTT 
TTTGTAGAGC ATTTTGAAGG AAAGATTATT AATATCCATC ATTCTTTTTT ACCTGCATTT 
ATAGGAGCTA ATCCTTATAA ACAAGCTTAT GAAAGAGGAG TTAAGATTAT AGGTGCAACA 
GCGCATTTTG TAAATAATGA CTTAGATGAG GGACCAATCA TTACTCAAGA TGTAATCCCC 
ATAACACATG AGTATTCTTG GCAAGCTATG CAGCAAGCTG GTCGCAATGT AGAGAAAAAT 
GTATTTTCTA AGGCGCTAGA TTTAGTTTTT GATGATAGAA TTTTTATACA CGAAAATAAA 
ACAATAGTGT TTTAA 

 

Protein sequence

MQKLKIDLKN DQDFLRIKNI LKPYTQRAYL VGGCVRNSFL DLSSDDYDIE IYDIEPQIFD 
DLMQKLGANG VGKSFFVYKY KKFDLALARY ENKISTGHRG FEVKVCNDEQ EGAKRRDFTI 
NALMVNIFDF KFLDFFNGLQ DLQAKIIRHI DDKSFVEDSL RVLRGISFAC RFDLTIARES 
LKLMQTMDIS DLSKERINNE LYKIFKTSRL NKAYEYFKIL NLEEKIFFYQ SHNKEFERLL 
EHSQKLICDE ALYLYLYLNF FRINKEEFFK KTKLKKELLK KCEQGFILGK IDDFNLAKIA 
LKIPLCKWLG LWDNERITQA KKINLYYHTF ESKISANDLL KEGFNGKELG IELEKRRLQE 
LKNYIKEQKM KEYILKISCS DEKGLIYRIS DVIFKYRINI IKNDEFVGEN RFFFRAHLEG 
ELDIKAFKGT LEAMLPDNAQ IEITPKRKKD IIVLATKETH CLGELLIRQF SGEFNANIKA 
VIANYDTLKP LVDKFNIPFH AILAKDLSRQ EHEEKILQCL KEYEFDYIVL AKYMRILSPF 
FVEHFEGKII NIHHSFLPAF IGANPYKQAY ERGVKIIGAT AHFVNNDLDE GPIITQDVIP 
ITHEYSWQAM QQAGRNVEKN VFSKALDLVF DDRIFIHENK TIVF