| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_0450 |
|---|
| Symbol | rpoC |
|---|
| ID | 7411187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter lari RM2100 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012039 |
|---|
| Strand | + |
|---|
| Start bp | 421532 |
|---|
| End bp | 426085 |
|---|
| Gene Length | 4554 bp |
|---|
| Protein Length | 1517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 643717581 |
|---|
| Product | DNA-directed RNA polymerase, beta' chain |
|---|
| Protein accession | YP_002575054 |
|---|
| Protein GI | 222823480 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAT TTAAACCTAT CGAAATAAAA GAAGATGGTA GACCAAGAGA CTTTGAAGCT
TTCCAGCTAA GACTTGCAAG TCCAGAAAAA ATAAAATCTT GGTCATATGG TGAAGTAAAA
AAACCAGAAA CTATTAACTA TAGAACCTTA AAGCCAGAAA GAGATGGATT ATTTTGTGCT
AAAATTTTTG GCCCAGTGAG AGATTATGAG TGTCTTTGTG GCAAATACAA AAAAATGCGT
TTTAAAGGCA TTAAATGTGA AAAGTGTGGG GTTGAAGTTA CTACTTCAAA AGTTCGTCGC
TCAAGAATGG GGCATATAGA GCTTGTAACT CCTGTTGCTC ACATTTGGTA TGTAAATTCT
TTACCAAGTC GTATAGGAAC ATTACTTGGT GTTAAAATGA AAGATTTAGA GCGTGTATTG
TATTATGAAG CATACATAGT AGAAAATCCA GGTGATGCAT ATTATGATAA TGAAAATTCA
AAAAAAGTTG AATTTTGCGA TGTTTTAAAT GAAGAGCAAT ATTTAAATTT AATGCAACGC
TATGAAAGCA GTGGATTTAA AGCTAGAATG GGTGGAGAAG TTGTTAGAGA TTTGCTAGCA
AATTTAGATC TTGTTGCATT GTTAAATCAA TTAAAAGAAG ATATTGCTTC AACAAATTCT
GAAGCCAAGA AAAAAACTAT TATTAAACGC TTAAAAGTTG TAGAAAATTT CTTAAATAGT
AATTTAAATA GCAATACAAA CATTGATGAA GTTGTGCCAA ATAGACCTGA ATGGATGATG
ATCACAAATC TTCCTGTGTT GCCACCTGAT TTAAGACCTT TGGTTGCTTT AGATGGTGGA
AAATTTGCTG TTTCTGATGT GAATGATTTA TATAGAAGAG TTATTAATAG AAATACTCGC
TTAAAAAGAT TAATGGAGCT TGATGCACCT GAAATTATCA TTAGAAATGA AAAAAGAATG
CTTCAAGAAG CAGTTGATGC TTTATTTGAT AATGGTAGAA GAGCAAATGC AGTAAAAGGT
GCTAATAAGC GTCCATTAAA ATCTTTAAGT GAAATCATCA AAGGAAAACA AGGTCGTTTC
AGACAAAATC TACTTGGTAA GAGGGTGGAT TTTTCAGGTC GTAGCGTTAT AGTTGTTGGG
CCAAAACTTA GAATGGATCA ATGTGGTTTA CCTAAGAAAA TGGCTTTAGA ATTATTTAAA
CCGCATTTAT TGGCTAAGCT TGAAGAAAAA GGTTATGCAA CAACTGTTAA ACAAGCCAAA
AAAATGATCG AAAATAAAAC CAATGAAGTT TGGGAGTGTT TAGAAGAGGT TGTTAAAGGT
CATCCTGTAA TGCTTAACCG TGCGCCAACT CTCCATAAAC TTTCTATACA AGCGTTTCAC
CCTGTGCTTG TTGAAGGTAA AGCTATACAA CTTCATCCAT TGGTGTGTGC AGCATTTAAT
GCCGACTTTG ATGGGGATCA AATGGCTGTG CATGTGCCTT TATCACAAGA AGCGATAGCT
GAATGTAAAG TATTAATGCT CTCATCTATG AATATCTTGC TTCCAGCAAG TGGTCGTTCT
GTGACTGTTC CTTCTCAAGA TATGGTTTTA GGAATTTATT ATCTATCTTT AGAAAAAGAT
GGTGCTAAAG GTGAGCATAA AATTTGTACT GGAATTGAAG AGGTTATGAT AGCTTTAGAA
GCAAAATCTT TAGATATTCA TGCAAGCATT AGAAGTGTGG TTGATGGAAG AAAAATCACA
ACAACCGCGG GTAGATTAAT CATTAAGTCT ATCTTACCTG ATTTTGTTCC TGAAAATATG
TGGAATAAAG TCATGAAGAA AAAAGATATC GCTGCTTTGG TTGATTATGT TTATAAAGAA
GGCGGACTTG AAGTAAGTGC GAGCTTTTTA GATAAACTAA AAGATCTTGG TTTTGAGTAT
GCAACAAAAG CAGGTATTTC TATTTCAATT GCTGATATTA TTGTGCCTGA TCAAAAGCAA
AAAAATATTG ATGAAGCTAA AAAACAAGTA AGAGAAATTC AAAATTCATA TAATCTAGGT
TTAATCACTT CAGGCGAAAG ATATAATAAG ATTATTGATA TTTGGAAAAG CACTAATAAT
ATCTTGTCAA AAGATATGAT GGAGTTGATT AAAAAAGATA AAGAAGGATT TAACTCTATT
TATATGATGG CAGATTCTGG TGCTAGAGGT TCAGCAGCCC AAATTTCACA GCTTGCTGCG
ATGAGGGGTC TTATGGCTAA GCCTGATGGC TCAATTATTG AAACGCCTAT TATTTCAAAT
TTCCGTGAAG GGCTTAATGT ACTTGAGTAT TTCATATCAA CTCATGGTGC TAGAAAAGGT
CTTGCAGATA CAGCGTTAAA AACGGCAAAT GCAGGTTATT TAACAAGAAA ACTTATCGAT
GTGGCACAAA ATGTAAAAGT TACAGTGGAT GATTGTGGTG CACATGAGGG TGTTGAAATT
AATGAAATCA CAGCAGATGG TGTCGTAATT GAAACCTTAG AGGAAAGAAT TTTAGGAAGA
GTCTTAGCTG AAAATATTAT TGATTCTATT ACTAATGAAA TTTTATTTTC AGAAGGTACT
TTGATAGATG AAGAAAAAGC TAGAGTAATT GTTGAAAGTG GTGTAAAAAG TGTAAGTATT
AGAACTCCTA TTACTTGCAA AGCTAAAAAA GGAGTTTGTT CTAAATGCTA TGGTATTAAC
CTAGGTGAGG GCAAATTAGT TAAGCCAGGT GAAGCTGTAG GTATTATATC TGCTCAATCA
ATCGGTGAGC CAGGAACTCA GCTTACACTA AGAACTTTCC ATAGTGGCGG TACTGCTAGT
ACAGATTTGC AAGATCGTCA AGTAGTAGCA CACAAAGAAG GTTTTGTGAG ATTTTATAAT
CTTAACACTT ATGAAGATAG ACAAGGTAAA ACTATCGTTG CCAATCACCG CAACGCTGCT
ATTTTACTTG TTGAACCAAA AATCAAAGCT CCATTTAAAG GAACTATCCA TATTGAACAT
GCATATGAAG ATGTAGTGGT TAGCGTTAAA GCAAAAAACA ATGAAGCTAA ATTTATATTA
AGAAAATATG ACTTAGCAAA AGCTAATGAG CTTGCCGGTG TAAGTGGTAA TATCGAAGGT
AAGTTATATA TTCCATATAG CGATGGTGTT GAAGTAGCTG AAAATGAAAG TATTGTTGAA
GTAATCAAAG AAGGTTGGAA TATACCAAAT CGTATTCCTT ATGCAAGTGA ATTGCTAGTA
AAAGATGGTG ATCCTATCAC TCAAGATATT ATAGCAGGTG CAAAAGGCAC ATTAAAATTT
TACATGCTCA AAGGCGATGG TTTAGATAGG ATTAAAAATC TTAAAAAAGG TGATGTAGTT
AAAGAAAAAG GTGTTTTTGT TGTTATTGCT GATGAAAATG ATAGAGAAGC AAAAAGACAT
TATATACCAA GAGAATCCGT AATTGAATTT GATGATAGTG CTTTTGTGGA TAATCCTAAA
GCTATCATAG CAAAATCAAG CAAAGAAGAT AAAACTATCA TTGCTGAATG GGATGCATAT
AATAACACCG TAATTGCAGA GGTTGCAGGT ACTATAAATT TTGAAGATAT TGAATCAGGC
TATAGTGCCG ATGAACAAAT TGATGAAGCA ACAGGTAAAA GATCTTTAGT AATTAATGAG
TATTTACCAA GTGGTGTGCG TCCAGCTATT TTAATTCTTG GAGAAAAAGG TAAAATGGTT
CGTTATCAAT TAGAACCAAA AACCGTTATT TATGTAAATG ATGGAGATAA AGTTAAACAA
GCAGATATTT TAGCTAAAAC TCCAAAAGCA GCAACAAAAT CAAAAGATAT TACGGGTGGT
CTTCCAAGAG TTTCAGAATT ATTTGAAGCA AGAAAACCAA AAAATACTGC CGTAATTGCT
GAGATTGATG GTGTAGTAAG ATTTGATAAG CCTTTAAGAT CGAAAGAAAG AATTATTATT
CAAGCTGAAG ATGGTAGTAG TGCTGAATAT TTAATCGATA AATCAAAACG CATTCAAGTA
AGAGATGGTG AGTTTATCCA TGCTGGCGAG AAATTAACTG ATGGAGTTAT TTCAAGTCAT
GATGTGCTTA GAATTTTAGG TGAAAAAGCA TTACATTATT ATCTAATTTC TGAAATTCAA
CAAGTTTATC GCGGTCAAGG TGTTGTAATT TCTGATAAGC ATATTGAAAT TATTGTATCG
CAAATGCTAA GACAAGTAAA AATTGTTGAT AGTGGTCATA CAAATTTTAT AGTTGGTGAT
TTAGTTTCAA GAAGAAAATT CAGAGAAGAA AATGAGAGAA TTTTAAAATA TGGTGGTGAA
CCAGCTGTAG CTGAACCTGT ATTGCTTGGG GTTACAAGAG CGGCTATTGG AAGCGATAGT
GTTATTTCAG CTGCTTCATT CCAAGAAACT ACTAAAGTTT TAACAGAAGC AAGTATTGCA
GGTAAATTTG ATTATTTAGA AGATCTTAAA GAAAATGTAA TACTAGGCCG TATGATACCT
GTTGGAACAG GGCTTTATAG CGAGCAAAAC ATAAAACTTA AACAACAAAA TTAA
|
|---|
| Protein sequence | MSKFKPIEIK EDGRPRDFEA FQLRLASPEK IKSWSYGEVK KPETINYRTL KPERDGLFCA
KIFGPVRDYE CLCGKYKKMR FKGIKCEKCG VEVTTSKVRR SRMGHIELVT PVAHIWYVNS
LPSRIGTLLG VKMKDLERVL YYEAYIVENP GDAYYDNENS KKVEFCDVLN EEQYLNLMQR
YESSGFKARM GGEVVRDLLA NLDLVALLNQ LKEDIASTNS EAKKKTIIKR LKVVENFLNS
NLNSNTNIDE VVPNRPEWMM ITNLPVLPPD LRPLVALDGG KFAVSDVNDL YRRVINRNTR
LKRLMELDAP EIIIRNEKRM LQEAVDALFD NGRRANAVKG ANKRPLKSLS EIIKGKQGRF
RQNLLGKRVD FSGRSVIVVG PKLRMDQCGL PKKMALELFK PHLLAKLEEK GYATTVKQAK
KMIENKTNEV WECLEEVVKG HPVMLNRAPT LHKLSIQAFH PVLVEGKAIQ LHPLVCAAFN
ADFDGDQMAV HVPLSQEAIA ECKVLMLSSM NILLPASGRS VTVPSQDMVL GIYYLSLEKD
GAKGEHKICT GIEEVMIALE AKSLDIHASI RSVVDGRKIT TTAGRLIIKS ILPDFVPENM
WNKVMKKKDI AALVDYVYKE GGLEVSASFL DKLKDLGFEY ATKAGISISI ADIIVPDQKQ
KNIDEAKKQV REIQNSYNLG LITSGERYNK IIDIWKSTNN ILSKDMMELI KKDKEGFNSI
YMMADSGARG SAAQISQLAA MRGLMAKPDG SIIETPIISN FREGLNVLEY FISTHGARKG
LADTALKTAN AGYLTRKLID VAQNVKVTVD DCGAHEGVEI NEITADGVVI ETLEERILGR
VLAENIIDSI TNEILFSEGT LIDEEKARVI VESGVKSVSI RTPITCKAKK GVCSKCYGIN
LGEGKLVKPG EAVGIISAQS IGEPGTQLTL RTFHSGGTAS TDLQDRQVVA HKEGFVRFYN
LNTYEDRQGK TIVANHRNAA ILLVEPKIKA PFKGTIHIEH AYEDVVVSVK AKNNEAKFIL
RKYDLAKANE LAGVSGNIEG KLYIPYSDGV EVAENESIVE VIKEGWNIPN RIPYASELLV
KDGDPITQDI IAGAKGTLKF YMLKGDGLDR IKNLKKGDVV KEKGVFVVIA DENDREAKRH
YIPRESVIEF DDSAFVDNPK AIIAKSSKED KTIIAEWDAY NNTVIAEVAG TINFEDIESG
YSADEQIDEA TGKRSLVINE YLPSGVRPAI LILGEKGKMV RYQLEPKTVI YVNDGDKVKQ
ADILAKTPKA ATKSKDITGG LPRVSELFEA RKPKNTAVIA EIDGVVRFDK PLRSKERIII
QAEDGSSAEY LIDKSKRIQV RDGEFIHAGE KLTDGVISSH DVLRILGEKA LHYYLISEIQ
QVYRGQGVVI SDKHIEIIVS QMLRQVKIVD SGHTNFIVGD LVSRRKFREE NERILKYGGE
PAVAEPVLLG VTRAAIGSDS VISAASFQET TKVLTEASIA GKFDYLEDLK ENVILGRMIP
VGTGLYSEQN IKLKQQN
|
|---|
| |