| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccur_10870 |
|---|
| Symbol | |
|---|
| ID | 8375294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptobacterium curtum DSM 15641 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013170 |
|---|
| Strand | - |
|---|
| Start bp | 1235181 |
|---|
| End bp | 1236278 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644994009 |
|---|
| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
|---|
| Protein accession | YP_003151460 |
|---|
| Protein GI | 256827501 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
|---|
| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.819811 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 165 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATA GTACAAGCAG GAAAACGAAT GCAGGGCAGC CGGTGGCGCC TCATGAATTA
ACACGACGGG TCATGGTGGG CTCAGTACCT TTAGGGGCTG GTGCTCCCTG TGCCGTACAG
TCAATGACAT GCATGCCAGC TGACGACGCC CAAGCAAACC TCGATCAAAT TGCGCGTCTT
GCTGCAGCTG GCTGTGAAAT TGTGCGTATG GCCATTCCCC GTCGTGCCTA TCTTGATACG
TTCCAAGCAG TCTGCGAGGC GTCGCCTTTG CCGGTGGTGG CCGACGTGCA CTTTGATGCG
CATATTGCCA TTGAAGCAGC GCGCCGCGGC GCAGCGAAAC TGCGCATCAA TCCTGGCAAT
GTTGGTGGTC TTGCTAAGGC TGATGCAGTT ATTGACGCAG CTGGTGAAGC GGGTATCCCC
ATTCGTATTG GCGTTAATGC GGGCTCTCTC GACGATGCTC TTGCAGCGCG TGACGACTTA
GCACTGCCCG AAAAACTTGC CGAATCTGCT GCTGGCTACG TAGATCATTT CGAGCAGCGT
GGGTTCACTG ATATTGTAGT ATCGGCTAAG GCTTCCGACG TTCCCACCAC CGTTGCTGCT
TATCGCTTAC TGGCACAGCG CATCCCTGAG ATTCCCCTGC ATATTGGGGT AACCGAAGCC
GGTACGCTGT TCCAGGGTCT TGTTAAGTCG GCAAGTGGTT TAGGGATTCT ACTGGAAGAA
GGCATTGGCG ATACCATGCG TATTTCGCTA ACCGACGATC CGGTGGAAGA AGTGCATGCG
TGCTGGTCGT TGCTGTCGGC CTTGGGGTTG CGTCGTCGCA GTCCTGAACT GGTAAGTTGT
CCCACCTGTG GGCGGTGTCA GGTCAATTTA ATCGGGCTGG CAAAAGAAGT TGACGAGCGC
TTACGTGATG TGGCGTCACC GGTAAAGGTG GCGGTTATGG GCTGTGTGGT CAACGGGCCG
GGTGAGGCGG CCGATGCCGA TATCGGTGTG GCGTGTGGGT CTGGATCAGG CGTGATTTTC
AAAGACGGGA AAACCTTGCG CAAGGTGGAC GAAGCATCTA TTGTGGATGC TTTGATGGAG
GAGATTGGAA AACTATGA
|
|---|
| Protein sequence | MSDSTSRKTN AGQPVAPHEL TRRVMVGSVP LGAGAPCAVQ SMTCMPADDA QANLDQIARL
AAAGCEIVRM AIPRRAYLDT FQAVCEASPL PVVADVHFDA HIAIEAARRG AAKLRINPGN
VGGLAKADAV IDAAGEAGIP IRIGVNAGSL DDALAARDDL ALPEKLAESA AGYVDHFEQR
GFTDIVVSAK ASDVPTTVAA YRLLAQRIPE IPLHIGVTEA GTLFQGLVKS ASGLGILLEE
GIGDTMRISL TDDPVEEVHA CWSLLSALGL RRRSPELVSC PTCGRCQVNL IGLAKEVDER
LRDVASPVKV AVMGCVVNGP GEAADADIGV ACGSGSGVIF KDGKTLRKVD EASIVDALME
EIGKL
|
|---|
| |