Gene Ccur_00400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCcur_00400 
Symbol 
ID8374248 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCryptobacterium curtum DSM 15641 
KingdomBacteria 
Replicon accessionNC_013170 
Strand
Start bp54298 
End bp55869 
Gene Length1572 bp 
Protein Length523 aa 
Translation table11 
GC content47% 
IMG OID644992964 
Productamino acid carrier protein 
Protein accessionYP_003150455 
Protein GI256826496 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1115] Na+/alanine symporter 
TIGRFAM ID[TIGR00835] amino acid carrier protein 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.149456 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones82 
Fosmid unclonability p-value0.00282795 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGACATGA AGTTTCTCGT TGATCTGTCT GGGCAGATTG ATACGTTTAT GTATACCTAC 
ATTCTTATTA TCATGCTGGT TGCATCTGGT GTGCTGTTTA CCATTCGCAC TAAAGGCGTG
CAAATTCGCC TGTTTAAGGA CATGATTAAG TCTATTACCG AACAGAAATA TAACGAAGGT
GAAAAGACTA CCTCATCGTT TCAGGCATTG ATGATATCCA CGGCCAGCCG GGTTGGTACG
GGCAATATTG CCGGCGTTTC GACAGCCATT GCTTTTGGCG GCCCTGGTGC ACTGTTTTGG
ATGTGGATTA TGGCCACTGT GGGTTCGGCT TCAGCGTTTA TCGAATCGAC GTTGGCTCAA
ATATTCAAGG TAAAGAATGA GGACGGTTCG TTTCGTGGTG GTCCGGCATA CTATATTCAG
CAGGGGATTG GCAAACGGTG GCTTGGAGTG GTTTTTGCCC TGGCACTTAT TGTCTGCTTC
GCCTATGGTT TTAATGCACT ACAGGCCTAT AATGCCTCAT CAACACTGGA AGTCTATATG
CCAGACTATT TCAAAAGTGA CGTTGTGGTT GCCGTTGCAT TGTTCTTAGC GGCATTTACT
GCTATCTGCA TCTTTGGTGG CGGGAGCCGT ATTAGTTTCT TTACGAGCAT TATTGTGCCG
GTTATGGCGT TTAGCTATTT AGCTATCGCA CTCGTTATTA CCTTCATGCA TATCTCTGCT
GTGCCGGCTG TATTCGGGCT GATTTTTTCG TCGGCTTTTG ATTTTCGATC ATTTGCAGGT
GGGTTTGCCG GGTCGGTTGT CTCGTGGGGT ATTAAACGCG GTCTTTATTC GAATGAAGCC
GGTATGGGCT CTTCACCAAA TGCCGCTGCT GCTGCTTCGG TTTCTCATCC TGTTAAACAG
GGGCTTGTGC AGACACTCTC AGTATTCATT GACACGATGA TCATCTGTAC CTGCACCGGT
ATGATGGTGC TCGTGTTTTA TGTGGGTAGC AACTTGGAAA CTATGGTCGA TCCGATAACA
AATGTTACCT CGTTTGTAAA TCCGCAGACG GGTGCCATTC TTACCGGTAT GCCTCTTATC
CAAGAGGCTT TGCGCTATTC GTTGGGCGAT TTCGGTGTGA ACTTCGTTAC GTTTAGCATT
TTCTTATTTG CTTTTTCGAG CTTGCTTGGC AATTACTACT ATGCCGAAAG CAACATGCGG
TTTATCAAAG ATAACCGCAT TGTCGTGTTC ATTTTCCGTA TTACCTGCAT TATTGCAGTA
TTTTGGGGCG CACAGGCAGG ATTTGACCTA GTGTGGAACT TTGCTGATAT CGCGATGGGC
TTTCAAGCGT TCGTCAATCT GGTTGCCCTT TTCTTACTGG GAGGATGGGC TGTTAAAGCG
TTGCGCGACT ACGAAAGCCA ATCGCAGAAA GGGGAAAACC CTGTCTTTTT GGCTGCGTCT
ATTCCAGGCT TGCCCAAAAC GGAATGCTGG CATGAAACAG CCGAGGAACT TGCAGCTGAT
GCAGCGCGTG GTACGCTTGC AGCCGATGCA AAAATGAAGC ATCAGGTTGT TGAACTGCTG
AACGATAAGT AG
 
Protein sequence
MDMKFLVDLS GQIDTFMYTY ILIIMLVASG VLFTIRTKGV QIRLFKDMIK SITEQKYNEG 
EKTTSSFQAL MISTASRVGT GNIAGVSTAI AFGGPGALFW MWIMATVGSA SAFIESTLAQ
IFKVKNEDGS FRGGPAYYIQ QGIGKRWLGV VFALALIVCF AYGFNALQAY NASSTLEVYM
PDYFKSDVVV AVALFLAAFT AICIFGGGSR ISFFTSIIVP VMAFSYLAIA LVITFMHISA
VPAVFGLIFS SAFDFRSFAG GFAGSVVSWG IKRGLYSNEA GMGSSPNAAA AASVSHPVKQ
GLVQTLSVFI DTMIICTCTG MMVLVFYVGS NLETMVDPIT NVTSFVNPQT GAILTGMPLI
QEALRYSLGD FGVNFVTFSI FLFAFSSLLG NYYYAESNMR FIKDNRIVVF IFRITCIIAV
FWGAQAGFDL VWNFADIAMG FQAFVNLVAL FLLGGWAVKA LRDYESQSQK GENPVFLAAS
IPGLPKTECW HETAEELAAD AARGTLAADA KMKHQVVELL NDK