Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ccel_3090 |
Symbol | |
ID | 7311688 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium cellulolyticum H10 |
Kingdom | Bacteria |
Replicon accession | NC_011898 |
Strand | - |
Start bp | 3624126 |
End bp | 3627650 |
Gene Length | 3525 bp |
Protein Length | 1174 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 643609994 |
Product | transcription-repair coupling factor |
Protein accession | YP_002507362 |
Protein GI | 220930453 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.192538 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACTTTT TTACAGATCC TCTCTTAAAA ATAGATGAAT ATAATACACT TTTATCAAAC GTCAGGGAGG AACGGGGCCC CGTATCGGTT ATAGGGCCGT CAGATTCACA GAAGGTGCAC CTGATATATT CTTTGTGTAC TCATTTACAA AAAAGAGGAC TGTATATAAC ATACAATGAA ATGCAGGCCA GGAGGGTTTA CGACGATTTT TCGTTTTTCC TTGGGGATGA TGTTTTGTAT TACCCTCCAA AAGAGACTAT GCTCTATAAT GTAGAAGCCA GAAGCAACGA TATAATATAC CAAAGGACTA AAACCCTTTT GAACTGTTTA GAGGGAAACT ATAAGATGGT TGTAATGTCA GCTGAAGCGC TTATACAGAT GATTTCACCA GTTGAACTCT TTAGAGAAGG GATAATGGAC TTCTATGTCG GTTCACAGGT GAATCTTGAT GAGCTTGTCT CAAAGCTTGT TTTGTATGGC TATGAAAGAG TTGAAAGTGT GGAAGGTAAA GCTCAGTTTG CTGTTCGAGG TGGAATAATA GATGTTTTTG CAGTAAACAG TGAACATCCT GTTCGTATTG AATTATTTGA TACTGACGTG GATTCTATTA GGCACTTTGA TGAAACAACA CAGAGATCTA CAAATTCAAT TGATGAGTGC AGAATTGCTC CCGCAAGGGA CGTAGTTTAC AAGGAAGTTT CAAGGGAAGG AATAATTTCA AAGATAAAAA AGGATCTGGC TGACTACATT AAAAAGTTAA AGCAGAAGGA GAACAGAGAA GGTGTTAAAA ATATATCAAA ACGGGTTGAG GAGGATATTG ACAGTTTAAT TGAACACCAT TATTTTCCGG GGATTGACAG ATACTATCCG TATATTTTAG AAAGTCCAGC TTCTGTAATA GACTATATTG AGAGTGAATC AATCATTATC ATGGATGAAA CCTTAAGAAT AAGCCAGAGG ATTGAGAACG TCGAGCTTGA ACATGAAGAA CTTGCCAAGA GTCTGTTAGA GAAAGGCGGT ATTCTGCCTA AAGGAGCACA ATGGACCTTT TCCACAGACT CAATAGTCGA TCGCATTTTG AATTTCAGGA CTATAACATT GTCTGCTATT TCATCCAACA ACTCACTAAT CAGACCTTAT AACCAGATAT CAATACCCTG TAAGTCAGGG AACTCTTACC AGAACCATAT AGACTTACTT GTTGACGACA TAGGACAACT TCGGAAAAGA GAATATAAAA TAATTGTTCT TTCAGGCCCC AGCGGGAGGG GACACAGACT GGTTGAAACC CTTGCAACTA ATGAAATAAT GTCCAGTTAC AAAGAGCATC CTGAGTACAG GATACAGAAC GGAGAGGTTG TGGTAACTCA CGGCAGCCTG CAGAAAGGGT TTGAATACCC GACCGCGGCA TTTGTTGTAA TAAGTGACAT TGAGGTTTTC GGTCAGGCTA AACGAATAAA AAAGGCAAAG GCAAAGAGGG CTGGCAATAA AATAAAAGCA TTTTCCGACC TCAATATTGG TGACTTTGTT GTACATCAGG CTCACGGTAT AGGCCAATAT ATCGGTATTG AAAATCTCAG CGTGGGTGAA GTTAAGAGGG ATTATCTCAA AATCCGTTAT CAGGAAGGAG ACTTCCTTTA CATTCCAACT AACCAGCTGG ATTTACTCCA AAAATACATC GGGTCCGAAG GGAAAACACC GAGGGTTAAT AAGCTTGGAG GTACTGAATG GGCCAAGACA AAGAGTCGTG TAAAGGAATC TCTGCAGCAA CTTGCGGCGG AGCTCATAAA GCTTTATGCA CAGAGACAGT CTGCAAAGGG ACATTCTTTC AGCGAGGACA CCGTTTGGCA AAGGCAGTTT GAGGAACTGT TTCCATATCA GGAAACCGAC GATCAACTTA AATGTATAGA TGAAATAAAA AAGGATATGG AGTCAGAAGG GCTCATGGAC AGGCTGCTTT GCGGAGATGT GGGCTACGGC AAAACCGAAG TTGCAATAAG GGCTGTATTC AAGGCCGTGA TGGATGGGAA GCAGGTGGCT TACCTTGCAC CTACAACTAT CCTTGCCCAG CAGCTGTATG AAAACTTTAA GACAAGGATG AATGATTTCC CAGTAACTGT TGATGTCATG AGCAGATTCA GGACACCGGC AGAGCAGAAG AAAATTGTAA AATCTGTTAA GGCCGGGAAC ACAGATATAC TCATAGGCAC ACACAGGCTT CTGCAAAAGG ATGTTGAATT TAAGGACCTT GGACTTCTTG TGATTGATGA GGAACAGCGT TTTGGTGTAA CCCACAAGGA AAAATTGAAA ACGTTAAAGC CAAATGTTGA TGTCTTGACT CTGACAGCTA CACCTATCCC CAGAACCCTG CATATGTCAC TGGTCGGAAT AAGGGATATA AGTGTACTGG AGGATCCTCC GGAAGAAAGG TACCCTGTTC AGACCTACGT TATGGAATAC AACATGGAGC TTATACGTGA TGGTATAATC CGTGAAATGG CAAGAGATGG TCAGGTTTTC TATATGTACA ACAGGGTAAG AGGCATTGAC CTGAAGGCAC AGGAAATCAG GAAAATGATA CCTGATGCAA GAGTTGCGGT TGCTCATGGT AAAATGAATG AAAAAGAGCT TGAAGATGTA ATGTACGGCT TTATCAACGG GGAGTATGAT GTGCTTGTAT GTACTACTAT TATTGAGTCA GGACTTGATA TGCCAAACGT TAATACTATT GTTGTAGAAG ATGCCGACAG AATGGGCCTA TCTCAACTTT ACCAGATAAG AGGAAGGGTT GGAAGATCCA ACAGGCTTGC ATATGCCTAT ATCACATATA AAAAGGACAA GGTTCTTTCA GAGGTGGCAG AAAAAAGACT TCAGGCTATA AAGGAATTTA CTGAATTCGG TTCAGGATTC AGAATAGCAA TGCGGGACCT TGAGATAAGA GGGGCAGGAA ACCTGCTTGG ATCTGAGCAG CACGGACATT TGGAAACCGT AGGTTACGAA ATGTACTGCA AACTACTGGA CGAGGCTGTG CAGGAGTTGA GCGGCAAGGA AGTACGCACA ACAGATGAAG AAATGGCAGT TGACCTGAAC GTTAATGCTT ATATAGATAA TGAATATATA AGTTCAGAAG AGCAAAAAAT TGATATGTAC AAAAAAATTG CCGCAATACA AAATGAAAAT GACGTCATTG ATTTGAAAGA TGAGTTAATA GACAGGTACG GAGATATACC CGAAGAAGTG GAAAATCTTA TGGACATTGC ATACATTAAG GCACTTGCTG TAGAGTGCGG CTTTATCGGT ATTGTCCAGA AGGACGATAC AATATTGTTT CAGTTGCGGA AGTCCGCTTC AACAGTATCC AAGTATCTGG GAGTGCTTAT GGATAAGTAC CCTAGAAGGA TTATGCTTAA TGCCAGCAGC AACCCTTATT TGTCATTTAA ATTGATATAT TCCTCGGGAA GAGAAAATTT GGCAAATATT AAGATTTTGT TACAATACAT TATTAAATTG CAGTATAATG AATAA
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Protein sequence | MNFFTDPLLK IDEYNTLLSN VREERGPVSV IGPSDSQKVH LIYSLCTHLQ KRGLYITYNE MQARRVYDDF SFFLGDDVLY YPPKETMLYN VEARSNDIIY QRTKTLLNCL EGNYKMVVMS AEALIQMISP VELFREGIMD FYVGSQVNLD ELVSKLVLYG YERVESVEGK AQFAVRGGII DVFAVNSEHP VRIELFDTDV DSIRHFDETT QRSTNSIDEC RIAPARDVVY KEVSREGIIS KIKKDLADYI KKLKQKENRE GVKNISKRVE EDIDSLIEHH YFPGIDRYYP YILESPASVI DYIESESIII MDETLRISQR IENVELEHEE LAKSLLEKGG ILPKGAQWTF STDSIVDRIL NFRTITLSAI SSNNSLIRPY NQISIPCKSG NSYQNHIDLL VDDIGQLRKR EYKIIVLSGP SGRGHRLVET LATNEIMSSY KEHPEYRIQN GEVVVTHGSL QKGFEYPTAA FVVISDIEVF GQAKRIKKAK AKRAGNKIKA FSDLNIGDFV VHQAHGIGQY IGIENLSVGE VKRDYLKIRY QEGDFLYIPT NQLDLLQKYI GSEGKTPRVN KLGGTEWAKT KSRVKESLQQ LAAELIKLYA QRQSAKGHSF SEDTVWQRQF EELFPYQETD DQLKCIDEIK KDMESEGLMD RLLCGDVGYG KTEVAIRAVF KAVMDGKQVA YLAPTTILAQ QLYENFKTRM NDFPVTVDVM SRFRTPAEQK KIVKSVKAGN TDILIGTHRL LQKDVEFKDL GLLVIDEEQR FGVTHKEKLK TLKPNVDVLT LTATPIPRTL HMSLVGIRDI SVLEDPPEER YPVQTYVMEY NMELIRDGII REMARDGQVF YMYNRVRGID LKAQEIRKMI PDARVAVAHG KMNEKELEDV MYGFINGEYD VLVCTTIIES GLDMPNVNTI VVEDADRMGL SQLYQIRGRV GRSNRLAYAY ITYKKDKVLS EVAEKRLQAI KEFTEFGSGF RIAMRDLEIR GAGNLLGSEQ HGHLETVGYE MYCKLLDEAV QELSGKEVRT TDEEMAVDLN VNAYIDNEYI SSEEQKIDMY KKIAAIQNEN DVIDLKDELI DRYGDIPEEV ENLMDIAYIK ALAVECGFIG IVQKDDTILF QLRKSASTVS KYLGVLMDKY PRRIMLNASS NPYLSFKLIY SSGRENLANI KILLQYIIKL QYNE
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