| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_0976 |
|---|
| Symbol | |
|---|
| ID | 7309806 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 1173577 |
|---|
| End bp | 1177395 |
|---|
| Gene Length | 3819 bp |
|---|
| Protein Length | 1272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 643607903 |
|---|
| Product | Beta-ketoacyl synthase |
|---|
| Protein accession | YP_002505318 |
|---|
| Protein GI | 220928409 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3321] Polyketide synthase modules and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.801633 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCTGGATT TTAATTCTGT TAAAAAGACC AAAAGTAACA AAAAAAGAAT TATTGAGATT
GAAGAAATTT CTGGTGAGGA TATTGCTGTA ATAGGAATGT ATGCTAGACT TCCTCAGGCA
GATGATATAG AAGGTTTTTG GGATAACCTT AAAAACGGCA GAGACTGTAT AACTAAATTT
CCTGCTTCAA GGCGGAGGGA TACAGAGAGT TATCTGCATT ACAAGGGGAG TACCAAAAGA
AATAGATATA GTACCGGTGC GTATCTTGAG GATATAGATA AGTTTGATAA CAGTTTCTTT
AATATAACTC CCAAAGAAGC AAGTCTTATG AGTCCGAACC AGAGGATATT TCTGGAGGCT
ACCTGGAAAG CAATAGAGGA TGCCGGGTAT GGAGGAAAGA AATTGGTTGG AAGTAAGACA
GGAGTGTACA TTGGCTTTGA AGCAGATGCT CCGTTTGATT ATACACGGTA TATTGAGGCA
TTTGATCCGA AATCAGTATC AGTTGCCGTA ACAGGTAATC TTACCTCGGT AATACCCAGC
CGTATTTCAT ATCTTCTGGA TTTAAAGGGG CCCAGTATAT CGATAGATAC TGCATGCTCA
TCTGCACTTG TTGCCGTTCA TATGGCATGT AAGGGGATAA AGAACAAAGA TTGCGAGATG
GCGATTGTAG GCAGCATACG ATTGAATTTT ATGCCGATGG AGGGACAGCT AAACTTTGGA
ATAAACGCCT CCGATGGCAG AGCAAAGACC TTTGATGACA GTTCAGACGG TACAGGAAGT
GGTGAGGGGG TTATTACTTA TCTCCTAAAA CCTTTAAGCA GGGCTTTAAA AGATAAGGAT
AATATACATG CAGTTATTAA AGGAAGTGCA ATTAATCAGG ATGGAAGATC AATAGGCTTA
TCGGCACCTA ATGTCCTTGC ACAGGAGGAT GTAATAGTTT CTGCCTGGAA AGATGCGGGC
ATAGACCCCG AAACAGTGTC ATATATAGAA GCACATGGTA CAGGTACTAA ACTTGGAGAT
CCCATTGAAG TAGATGGTAT CAGCAGGGCA TTTAGAAGAT ATACAAGTAA AAAACAGTTT
TGTTCCATCG GATCGGTGAA AACCAATATA GGGCATTTGG ATAATGCGGC GGGAGTGGCA
GGTATGCTGA AAGCAGTTCT ATCACTTAAA AATAAACAGC TTCCGGCATC ACTGCATTAT
AAAGTTCCAA ACAGGAGAAT TAATTTTAAG GATTCACCTG TATATGTTAA TGATAAGCTT
ACTCCTTGGG AAACACACGG ATTTCCAAGA AGATGTGGAG TAAGCTCATT TGGATTTAGC
GGGACAAACT GCCATATAAT TCTTGAGGAA GCCCCGTCAG TAGTTAATAA AAGTATTGAT
AGACCCTGCT TAGAGGTTTT AACTCTATCA GCTAAAACAA ACGATGCTTT AAAAGAACTC
GTGAAAAGGT ATAGATTATA TATACAAAAA AACGAGGATG TAGATATAGG AAATATGTGC
TATACACAAA ATACCGGAAG GTGGCATTTC GACTATCGTA TTGCTGTAAT TGCAAGGAAT
ACCATAGAAC TTAAAAACAA GCTGGATAAA CTTGTAAGTA TAGATTTTGA GGATATCAAC
GAAAAAGAAA TATACTTTGG AATTCAATTG GATAATATCA AACAGAAAGG ACAAAACGGA
CTTTTTGAAA GCAAGATAAA AGAGCTAAGC TGCGAGGCTG ATAAAAAGCT TGAAGAGTTT
ATTTTATCGG AAAAAACAGA AGAAGATGTA TTATATGATA TCTGCAAGAG GTATGTAGAG
GGTGCGAACA TTGACTGGGA TATACTTTAT AAGGGAGAAG ACAGGACTAG AATCAGCCTA
CCAACATACC CTTTCAGAAG AACAAGGTGC TGGATTAATG CGGAGGAGGG TTTAGAGAAT
GACCTCTTCT ATGTAACTGC ATGGGAAAGT AAAATATTGA AAAAGTCTTC AACTATAAAA
GGCAGTGTAT TGCTTTTTAG AGATAGTATC GGTAAAGCTG AAAAGCTGGT TGCAATACTA
AGGGGGATGC AGGTCAATGT TATAGAGGTT GATATAGGCA GCAAATATAA AAAGATAAAT
AATAGCAGGT ATCAAATATC CGCCTCTGCA AAAGCAATTC AAAGCCTGTT AAATGACATA
GACATAAAGG ATTTAAGGTA TGTTATACAC ATGGCCTCTA TTTCAGAAAG TAGTACCGAA
GATATCAGTA TTTTAAAACA GAAGCTGCAA AATGGCATAT ATAGCTTGTA TCATCTTCTT
CAAGGTACAG CCAAGTTAGG TTTAAAGGAT AGGCTGAATA TTGTGGTAGT TTCAGAGTAT
GTAAATAAAA TATGCGGTGA GGAAAATACT TTGAAGCCTG AAAATGCTGC AATGTTTGGT
ATGGGTAAGT CGGCATTCTG GGAATATCCC AATATAAGCA TAAGATGTAT TGATATTGAC
AGAGACACAG ATATATCGGT AATTGTTCCT GAGATATCTG CGGAAGGGGT TGAATTCTGC
ACTGGATATC GAAATGGTAA CAGATATGTG GAGATAATAA AACAAGCAAG TATTGAGAAT
AAGCTTTTAG ATATAAAAGA AGAAGGAGTT TATGTTATAA CAGGCGGTGC AGGCGGACTG
GGTATTGAAT TTGCCAAAAG ACTTGTTTTA AGGAACAGAA GGGCTAAGCT TGCATTTATT
AACCGTTCAA AGCTGCCGGA ACGCAACGAT TGGGATGCAA TATTGGCTTC CGGTTCAGAT
GAAAAAATGT GCAGACTTCT CAACAATATA AAAGACATGG AAGCTAGAGG AGCTGAGATT
ACTCTCCTAA GTGCTGATGT TTCAGAGTTT GAAGGTATGA AGGTGGTAAT ATCAGAGCTA
AAAAGAAGAT ATGGAAATAT TAATGGAATA ATTCACAGTG CCGGTATATC CAAAAGGGAT
GAGACTGAGG AAGATCTAAG AGCTGTATTA TCTCCCAAAA TTGAAGGGGC TTGGATACTG
GACAGACTCA CTCAAGAAGA AAACCTTGAC TTTTTCGTAA TGTGTTCTTC AGCTATTACC
CTTATAGGGG GGCTTGGAGG CGGAGGATAC ACTGCTGCTA ACGCATATCT TGATTCATTC
TCGGCACAAA GAAGTAGTCA GGGAAAGCGT ACCCTTGCAA TAAATTGGGC GGCATGGGAA
AACACTGGGC TGGCTGAAGG AATGACAATA AACGAAGATA AGGAGCTATT CAGAGTACTT
TTGCCTGAAA ATGCATTAGA TGCATTTGAA AATGCTTTGA ATTCAAATCT GGATAGAGTA
ATTATAGGAG AACTTAATCT AAGCAGCACA ATATTAAACC TTGGGGAATA CTTGCCTTTC
AGACTTTCTG ACAACTTAAA GAAAAATACT ATAGAGAAAA CCGTACAAGA AGAAGAGCAG
TTAAAAGATA TAAAGTTAAA AGGTAAAGAA GAGCAGGATT ATACAAAAAC TGAGGTGTTA
ATAGCAAAGA TATGGGGAGA GGTACTCGGA TTTGAAGAAT TTAATGTTAA TGATAATTTC
TTCACACTGG GAGGCGACTC TATAATGATT ACACGAGTTG AAACTCTTCT TGAGAAACAT
TACCCGGGAA GAATTACAAT ATCTGAGCTT TTTGCCTATC CGACAATTTC AAAGCTGTCT
CAATATCTGA GTTCGTCACA AATAAGCGGT AAGGAAGCAG ATACTGGCGA AACCGAGCTA
AGAGATAGTA TTTTTAAGCT ATTTGAGGAC ATTAGAGCAG GTAGCCGGAA TATAAGTAGT
GCAATAAAAT ATTATGATTC ATTAGAGGTG AGACGATGA
|
|---|
| Protein sequence | MLDFNSVKKT KSNKKRIIEI EEISGEDIAV IGMYARLPQA DDIEGFWDNL KNGRDCITKF
PASRRRDTES YLHYKGSTKR NRYSTGAYLE DIDKFDNSFF NITPKEASLM SPNQRIFLEA
TWKAIEDAGY GGKKLVGSKT GVYIGFEADA PFDYTRYIEA FDPKSVSVAV TGNLTSVIPS
RISYLLDLKG PSISIDTACS SALVAVHMAC KGIKNKDCEM AIVGSIRLNF MPMEGQLNFG
INASDGRAKT FDDSSDGTGS GEGVITYLLK PLSRALKDKD NIHAVIKGSA INQDGRSIGL
SAPNVLAQED VIVSAWKDAG IDPETVSYIE AHGTGTKLGD PIEVDGISRA FRRYTSKKQF
CSIGSVKTNI GHLDNAAGVA GMLKAVLSLK NKQLPASLHY KVPNRRINFK DSPVYVNDKL
TPWETHGFPR RCGVSSFGFS GTNCHIILEE APSVVNKSID RPCLEVLTLS AKTNDALKEL
VKRYRLYIQK NEDVDIGNMC YTQNTGRWHF DYRIAVIARN TIELKNKLDK LVSIDFEDIN
EKEIYFGIQL DNIKQKGQNG LFESKIKELS CEADKKLEEF ILSEKTEEDV LYDICKRYVE
GANIDWDILY KGEDRTRISL PTYPFRRTRC WINAEEGLEN DLFYVTAWES KILKKSSTIK
GSVLLFRDSI GKAEKLVAIL RGMQVNVIEV DIGSKYKKIN NSRYQISASA KAIQSLLNDI
DIKDLRYVIH MASISESSTE DISILKQKLQ NGIYSLYHLL QGTAKLGLKD RLNIVVVSEY
VNKICGEENT LKPENAAMFG MGKSAFWEYP NISIRCIDID RDTDISVIVP EISAEGVEFC
TGYRNGNRYV EIIKQASIEN KLLDIKEEGV YVITGGAGGL GIEFAKRLVL RNRRAKLAFI
NRSKLPERND WDAILASGSD EKMCRLLNNI KDMEARGAEI TLLSADVSEF EGMKVVISEL
KRRYGNINGI IHSAGISKRD ETEEDLRAVL SPKIEGAWIL DRLTQEENLD FFVMCSSAIT
LIGGLGGGGY TAANAYLDSF SAQRSSQGKR TLAINWAAWE NTGLAEGMTI NEDKELFRVL
LPENALDAFE NALNSNLDRV IIGELNLSST ILNLGEYLPF RLSDNLKKNT IEKTVQEEEQ
LKDIKLKGKE EQDYTKTEVL IAKIWGEVLG FEEFNVNDNF FTLGGDSIMI TRVETLLEKH
YPGRITISEL FAYPTISKLS QYLSSSQISG KEADTGETEL RDSIFKLFED IRAGSRNISS
AIKYYDSLEV RR
|
|---|
| |