| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_0616 |
|---|
| Symbol | carB |
|---|
| ID | 7309483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 711245 |
|---|
| End bp | 714460 |
|---|
| Gene Length | 3216 bp |
|---|
| Protein Length | 1071 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643607556 |
|---|
| Product | carbamoyl phosphate synthase large subunit |
|---|
| Protein accession | YP_002504977 |
|---|
| Protein GI | 220928068 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
|---|
| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAAAC GTAATGATAT TCATAAAGTA TTGGTTATCG GGTCCGGTCC GATAATAATT
GGTCAGGCCG CAGAATTTGA CTATGCCGGA ACTCAGGCGT GTCAGGCACT CAAGGAAGAA
GGAATAGAGG TAGTGCTGGT AAACAGTAAT CCTGCCACCA TAATGACCGA TACGAATATA
GCAGACAAGG TTTATATAGA ACCGCTTAAA GCGGAAGTAG TAAAAAATAT AATACGATGT
GAAAAACCTG ATAGCATTTT ACCTACACTG GGCGGCCAAA CAGGCCTGAA CCTGGCAATG
GAACTTGCAG AATCAGGTTT TTTGCAGGAG CAGGGAGTAA AGCTTCTGGG AACCGCCACC
GAGGCTATAA AAATGGCAGA AGACCGACAG GATTTTAAGG ATACCATGGA GCGTATAGGC
GAACCCTGTA TTGCAAGCAA GGTTGTTACC ACAATAGAGG ATGCAATTGC ATTTGCACGT
GAGATTGATT ACCCCGTTAT TGTAAGACCT GCATATACAC TGGGAGGAAC AGGTGGAGGA
ATCGTCAATA ATGAAGAAGA ACTGCGGGAA GTAGGAGAAA ACGGTTTAAG ACTCAGCCGT
GTTCACCAGG TTTTAATTGA AAAATGCATA TCAGGATGGA AGGAAATAGA ATATGAAGTA
ATAAGAGACG GTAAAGGAAA CGTTATAACT GTATGCAACA TGGAGAATAT TGATCCGGTT
GGAGTACATA CAGGGGACAG CATAGTTGTT GCACCTTCTC AGACTCTTGC AGACAAGGAA
TATCAGATGC TGAGAACCTC GGCATTAAAA ATAATATCAG CCTTGGGAAT ACAAGGGGGC
TGTAATGTAC AGTATGCACT TCATCCTACA AGCTTTGAAT ATGCTGTAAT TGAAGTAAAT
CCCAGAGTAA GCAGATCTTC GGCACTGGCC TCCAAGGCAA CGGGATACCC TATAGCAAAG
GTTGCTTCAA AGATTGCGAT AGGCTATGGT CTTGATGAAA TAAAAAATGC AGTAACCGGA
AAGACGTATG CATGTTTTGA ACCAACTCTT GACTATGTCG TAGTAAAAAT ACCAAAATGG
CCATTTGATA AATTTGTAAA GGCAAAGAGA ACACTGGGAA CCCAGATGAA GGCAACTGGA
GAGGTAATGT CTATAAGCAG CTCCTTTGAG GCGGCATTAA TGAAAGCAAT ACGTTCCCTA
GAACTGGGAA TATTTACACT GGAGCAGGAC ATATATAAAA ATCTTGAAGG CAGCGAGATT
GTGCAAAAGC TTCATGACAT AAACGATGAA AGAATATTTG TCATAGCAGA AGCAATAAGA
CGTTCTATAA CAGTTGAAGA TATTCATGAA ATAACCAAGA TAGATTATTT CTTCCTTTGC
AAGATAAAAG AGCTTGTAAT AATGGAAGAA AAGCTTAAAA ATGTAAGTAA GGATCAGCTA
AATAAGGATG TCCTAAAAAA GGCAAAGAAA ATGGGCTTTA CAGACACGAT AATCGCCAAG
CTGTCAGGGA TTCCTCAAAA AGAGATAACC GAACTGAGAA AGCAGAAAAA TATTATAGCG
GCATATAAAA TGGTTGACAC CTGTGCAGCT GAGTTTGAGG CTGTGACACC ATACTACTAC
TCAACCTATG ATGATTTTTC AGAGGTTAAG GAATCCCAAA AAGAAAAAGT TCTGGTTCTT
GGGTCAGGCC CAATAAGAAT AGGTCAGGGA ATAGAATTTG ACTACTGCTC TGTACACTCT
GTATGGGCTT TAAAGGAATT GGGTTATGAA ACAATAATTG CAAACAATAA TCCTGAAACG
GTAAGTACTG ATTTTGATAC CGCTGACAGG CTTTACTTTG AACCATTGAC GGCCGAAGAT
GTGGCAAATA TTGTTGAGGC TGAAAAGCCC AAAGGAGCTA TAGTACAGTT CGGTGGACAA
ACTGCCATCA AGCTCACAAA GGCTCTGGAT GATATGGGAG TAAAAATATT TGGTACAGAA
GCTAAAAATG TAGATGCTGC CGAGGATAGG GAAAAATTTG ATGAAATACT CGAAAAGACA
GATATTCCAA GACCTCAGGG CAAGACAATA TTCACTCTTG ATGAAGCAAT AGCAGCAGCA
AATGAACTGG GCTACCCGGT ACTTGTCAGG CCTTCCTATG TACTTGGAGG GCAAGGTATG
GAAATAGCTT ACAATGACAA GGATGTTAAA GAGTTTATGG AGATTATAAA CAGAACTGTT
CAGGAGCATC CTATACTTAT TGACAAATAT ATGATGGGTA AGGAAATCGA GGTTGACGCC
ATATGTGACG GTGAAGAGAT ATTAATACCC GGTATTATGG AACATCTTGA GAGAGCAGGG
GTTCATTCAG GTGACAGCAT ATCTGTATAT CCTACACAGA CTCTAAGCGA CAAGGTTAAG
GAGGTTGTAG TAGATTACAC TATAAAACTT GCAAAGGCCT TGAATGTAAT AGGAATGGTA
AATATCCAGT ATGTTTTATA CAACAACCAG GTTTATGTAA TAGAGGTAAA TCCAAGATCA
AGCCGCACTG TTCCTTATAT CAGCAAAGTA ACAGGAATTC CTATGGTAAA TCTTGCAACA
AAGGTAATGA TGGGTAAGAA GCTTAAAGAC TTCAAGTACG GAACGGGATT ATACAGAGAA
CCCGGATATG TTTCAGTTAA GGTTCCCGTA TTTTCCTTTG AAAAGCTCGA TGAAGTTGAC
ACAAGCCTTG GGCCTGAAAT GAAGTCAACA GGTGAGGTGC TTGGAATAGC GGACAATTTA
CCCGAAGCTT TGTACAAAGG CATTATAGCG TCAGGAATCA AGCTTCCAAA GTCGGGTGAC
GGAATACTTA TGACAGTGAG AGACACCGAC AAGCCTGAGT TGATTCATAT TGCTGAGGAA
TTTGAAAAGT TGGGCTTCAC CCTCTATGCA ACAGGCAAGA CTGCAAATAT GCTTAATAAC
AACGGAATAG CAACAAATGC GGTAAGAAAG CTGGATGAAG GCTCGCCAAA CATTATTGAA
CTAATTCACG CAGGCAAGCT TTCAATGATA ATAAATACCC CCACAAAGGG AAGAAACTCA
GACAGAGATG GTTTCAAAAT AAGAAGAAAA GCAGTTGAAA TGTCAATACC ATGCCTCACC
TCGCTTGATA CGGCAGAAGC AATTATTAAG TGCCTCAAGC TCGGCAAGAC CGAAGGTGAG
CTTGAAGTTC TGAATTTAAG CATATTTGAC GAGTAA
|
|---|
| Protein sequence | MPKRNDIHKV LVIGSGPIII GQAAEFDYAG TQACQALKEE GIEVVLVNSN PATIMTDTNI
ADKVYIEPLK AEVVKNIIRC EKPDSILPTL GGQTGLNLAM ELAESGFLQE QGVKLLGTAT
EAIKMAEDRQ DFKDTMERIG EPCIASKVVT TIEDAIAFAR EIDYPVIVRP AYTLGGTGGG
IVNNEEELRE VGENGLRLSR VHQVLIEKCI SGWKEIEYEV IRDGKGNVIT VCNMENIDPV
GVHTGDSIVV APSQTLADKE YQMLRTSALK IISALGIQGG CNVQYALHPT SFEYAVIEVN
PRVSRSSALA SKATGYPIAK VASKIAIGYG LDEIKNAVTG KTYACFEPTL DYVVVKIPKW
PFDKFVKAKR TLGTQMKATG EVMSISSSFE AALMKAIRSL ELGIFTLEQD IYKNLEGSEI
VQKLHDINDE RIFVIAEAIR RSITVEDIHE ITKIDYFFLC KIKELVIMEE KLKNVSKDQL
NKDVLKKAKK MGFTDTIIAK LSGIPQKEIT ELRKQKNIIA AYKMVDTCAA EFEAVTPYYY
STYDDFSEVK ESQKEKVLVL GSGPIRIGQG IEFDYCSVHS VWALKELGYE TIIANNNPET
VSTDFDTADR LYFEPLTAED VANIVEAEKP KGAIVQFGGQ TAIKLTKALD DMGVKIFGTE
AKNVDAAEDR EKFDEILEKT DIPRPQGKTI FTLDEAIAAA NELGYPVLVR PSYVLGGQGM
EIAYNDKDVK EFMEIINRTV QEHPILIDKY MMGKEIEVDA ICDGEEILIP GIMEHLERAG
VHSGDSISVY PTQTLSDKVK EVVVDYTIKL AKALNVIGMV NIQYVLYNNQ VYVIEVNPRS
SRTVPYISKV TGIPMVNLAT KVMMGKKLKD FKYGTGLYRE PGYVSVKVPV FSFEKLDEVD
TSLGPEMKST GEVLGIADNL PEALYKGIIA SGIKLPKSGD GILMTVRDTD KPELIHIAEE
FEKLGFTLYA TGKTANMLNN NGIATNAVRK LDEGSPNIIE LIHAGKLSMI INTPTKGRNS
DRDGFKIRRK AVEMSIPCLT SLDTAEAIIK CLKLGKTEGE LEVLNLSIFD E
|
|---|
| |