| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_0054 |
|---|
| Symbol | |
|---|
| ID | 7308973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | - |
|---|
| Start bp | 62580 |
|---|
| End bp | 63638 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643606983 |
|---|
| Product | periplasmic sugar-binding protein |
|---|
| Protein accession | YP_002504422 |
|---|
| Protein GI | 220927513 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02634] D-xylose ABC transporter, substrate-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000350797 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTGGATTA AGCAACTAAA AATATTTCTA CTACTTGCAA GTCTGATTAC TATGGTTCTT
TTAGCCGGTT GCTCTTACAA AAACCCAATC GATAAACCTG ATAAAATTAC TATTGGTCTC
TCCATGGCAA CCCTCCAAGA GGAACGTTGG CACAGAGACA TAGAAGCTCT CAGGGCCAAG
GCCCAAGCCA AAGGAGCAGA AATTCTTTTC CGAAATGCAA ACAATAATAT AAATGACCAA
ATTTCCCAGG TTAAAAGTCT GTTGTCAAAG GATATTGACA TTCTTGTAAT CGTTCCACAG
GACGCCGAAA AGTCTCAGCA GGCTGTTCAG CTTGCCAGAA ATAAGGGAAT AAGGGTAATC
TGCTATGACA GACTGATTAA AAATTCAAAC ACTGATTTCT ATGTATCTTT TGATAACATA
AGAGTTGGAG AATATATGGC ATCCCTGATG GTATCCAAAG TACCTAAAGG GAACTACATA
TTAATTAATG GAGCTAAAAC AGATTACAAT AGCTTTATGT ATAACAAGGG TTTTAAAAAT
ATTTTAGGCA AATACTTATA CGAAGGGTCC ATAAAAATCG TTGACGAAGT GTGGGCAAAT
GACTGGAAAC CGGAGGATGC CTTTAAGTGT GTGGACAAGG CTCTTCGGGA CGGAAAAAAG
ATTGATGCTA TTATTGCCGC CAATGACAGT CTTGCCGGCG CAGCAATCAA GGCTCTTTCT
CAAAGGCGAT TGGCAGGAAA AGTTCCTGTT GCCGGGCATG ACGCCGATAT TTCAGGTTGT
CAGAGAGTAG CTGAAGGTAC TCAGTTGCTG ACCGTTTACA AACCTATAGA TCAATTAGCC
GAAAAGGCAA TTGACGTTGT ACTGGGACTT TTGAATAATG ATTATTATGC CTGCAATAAA
TTTATTAATG ACGGTGAAAG TGATATTCCC TATGAGATGG TGGAACCTGT CGTAGTCACA
AAGGATACCC TTGTTGACAC TGTTATAAGT GCAGGCTTTC ATAAACTTGA AGATGTATAC
CGTAATGTGC CTGAAAGTAA ATGGCCTCGA AAAAAATAG
|
|---|
| Protein sequence | MWIKQLKIFL LLASLITMVL LAGCSYKNPI DKPDKITIGL SMATLQEERW HRDIEALRAK
AQAKGAEILF RNANNNINDQ ISQVKSLLSK DIDILVIVPQ DAEKSQQAVQ LARNKGIRVI
CYDRLIKNSN TDFYVSFDNI RVGEYMASLM VSKVPKGNYI LINGAKTDYN SFMYNKGFKN
ILGKYLYEGS IKIVDEVWAN DWKPEDAFKC VDKALRDGKK IDAIIAANDS LAGAAIKALS
QRRLAGKVPV AGHDADISGC QRVAEGTQLL TVYKPIDQLA EKAIDVVLGL LNNDYYACNK
FINDGESDIP YEMVEPVVVT KDTLVDTVIS AGFHKLEDVY RNVPESKWPR KK
|
|---|
| |