| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_3979 |
|---|
| Symbol | |
|---|
| ID | 5901441 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010338 |
|---|
| Strand | + |
|---|
| Start bp | 4310089 |
|---|
| End bp | 4310790 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641564500 |
|---|
| Product | isochorismatase hydrolase |
|---|
| Protein accession | YP_001685602 |
|---|
| Protein GI | 167647939 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1335] Amidases related to nicotinamidase |
|---|
| TIGRFAM ID | [TIGR03614] pyrimidine utilization protein B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.406396 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACAC CTGACACCCT GATGCTGCCG GCCCGGCCCG AACCGATCGC CCTGCCGGTC
GACAAGACCG CGGTGATCGT CATCGACATG CAGAACGCCT ACGCCTCCCC CGGCGGTTAT
CTGGACCTGG CCGGCTTCGA CATCAGCGGC GCGGCCGCGG TGATCGACAA GATCAAGGGC
GTGCTGGACG TGGCGCGCGG CGCGGGCATG CCGGTGATCT ATTTCCAGAA CGGCTGGGAC
AGCGACTATG TCGAGGCCGG CGGCCCCGGC TCGCCCAACT GGCACAAGTC CAACGCCCTG
AAGACCATGC GGGCCCGGCC CGAGCTGCAA GGCAAACTGC TGGCGCGCGG CGGCTGGGAC
TACGACCTAG TCGACGCCTT GAAGCCCGAA CCCGGCGACA TCCAGCTGCA CAAGACCCGC
TACAGCGGCT TCTTCAACAG CCAGCTCGAC AGCGTGCTGC GCTCGCGCGG CATTCGCCAC
CTGGTGTTCG TCGGCATCGC CACCAATGTC TGCGTGGAGT CGACCCTGCG CGACGGCTTC
TTCCTGGAAT ATTTCGGCAC GGTGCTCGAG GACGCCACCC ACCAGGCGGG TCCGGACTTC
GTGCAGAAGG CGGCGCTCTA CAACATCGAG ACCTTCTTCG GGTGGGTGTC GACCACGGCC
GACTTCAAGG GAGCCGTGGG GCAGCGGGAA GGCGCTGGCT AG
|
|---|
| Protein sequence | MTTPDTLMLP ARPEPIALPV DKTAVIVIDM QNAYASPGGY LDLAGFDISG AAAVIDKIKG
VLDVARGAGM PVIYFQNGWD SDYVEAGGPG SPNWHKSNAL KTMRARPELQ GKLLARGGWD
YDLVDALKPE PGDIQLHKTR YSGFFNSQLD SVLRSRGIRH LVFVGIATNV CVESTLRDGF
FLEYFGTVLE DATHQAGPDF VQKAALYNIE TFFGWVSTTA DFKGAVGQRE GAG
|
|---|
| |