| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_3188 |
|---|
| Symbol | |
|---|
| ID | 5900643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010338 |
|---|
| Strand | + |
|---|
| Start bp | 3451921 |
|---|
| End bp | 3453486 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641563692 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_001684813 |
|---|
| Protein GI | 167647150 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.477871 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACC AGGACTCCTC TCCCGCAGCC GCCAGCGGCC CAGCGCCGCT GACCGGCATG
ATGCTGGCGG TCACCTCGAT CGCCCTGGCG CTGGGCACTT TCATGCAGGT GCTGGACAGC
ACCATCGCCA ACGTCTCGAT CCCGACCATC GCCGGCAATC TGGGGGTCAG CACCAGCCAG
GGCACCTGGG TGATCACCTC GTTCGCGGTG GCCAACGGCG TCTCGGTGCC GCTGACCGGC
TGGCTGATGG GTCGCTACGG CGTCGTGAAG ACTTTCGTGG TCTCGGTGCT GCTGTTCACC
CTCGCCTCGT TCCTGTGCGG CGTTTCGTGG AACCTGCCGT CGCTGATCGG CTTTCGGATT
CTGCAGGGCC TGGTCTCGGG TCCGATGATC CCGGGCTCGC AGGCCCTGCT GATCATGATC
TTTCCGGCCA GCAGGCGGGG CACGGCCCTG GCCATCTGGT CGATGACCAC ACTGGTGGCG
CCGATCTGCG GCCCGATCCT GGGCGGCTAC ATCTCCGACA ACATCGCCTG GGAATGGATC
TTCCTGATCA ACGTACCCGT CGGCCTGCTC TGCGCCTTCC TGTGCTGGCG CGGGATGAAC
AACCGCGAGA CCCCGACCCG CAAGGTGCCG ATCGACACCA CCGGCTTCAT GCTGCTGCTG
GTCTGGGTCG GCGCCCTGCA AGTGATGCTC GACACCGGCA AGGACGCCGA CTGGTTCAAC
TCGCCGGCCA TCGTCGTCGA GACCCTGGTG GCCATCGTCG GCTTCATCGC CTGGGTGATC
TGGGAGCTGA ACGAGAAGCA TCCGATCGTC GACCTGTCGC TGTTCAAGTC CAAGAACTTC
GCCCTGGGCA CGGTCGCCTT CTGCCTGGGC TACGCGGTGT TCTTCGGCAG CAATCTGCTG
CAGCCGCTGT GGCTGCAAAC CCAGATGCAC TACATCGCCA CCTGGGCCGG CCTGGTCGCC
GCCCCCAGCG GCGTGGTGGC CGTGCTGCTG ACCCCGTTCG CCGCCCGCAT CATGCAGAAG
GTCGACGCCC GCTGGACCGC CACCCTGTCG CTGGCCGCGT TCGCCCTGTC GTTCTACATG
CGCTCGGGCT TCACGCCGGA CGTGGACTTC AAGGCCCTGG TTTGGCCGAT GCTGGTGCAG
GGGGTGGCGA TGAGCACCTT CTTCCTGTCG ATGGTGACCA TCTCGCTGAA CGGCGTGTCG
CCCCAGCAAC TGCCGTCGGC CTCGGGCCTG TCGAACTTCT CGCGGATCAC CGCGGGCAGC
TTCGCGGCCT CGCTGACCAC GACGATCTGG GACCGGGGCG AAAGCCTGCA CCAGAACCGC
ATCGCCGAAT CCATGGCCTC GAACGACCCG GCCTGGCTGG CGGCCGTGGA CCACATGCAG
GCCGCGGGCC TGAGCCACGC CCAGGCCGTG GGCGCGGTGA CCGCCCAGGT CGTCAACCAG
GCTTACCTCC TGTCGACCCT CGACTTCTTC CGCGCTTCGG CTTGGCTGGC GGTCCTGCTG
ATCCCATGCA TCTGGCTGAC CAAGAAGGCG ATGAGCGGCG GCGGCGCGCA CGCGGCGGCC
GACTAG
|
|---|
| Protein sequence | MADQDSSPAA ASGPAPLTGM MLAVTSIALA LGTFMQVLDS TIANVSIPTI AGNLGVSTSQ
GTWVITSFAV ANGVSVPLTG WLMGRYGVVK TFVVSVLLFT LASFLCGVSW NLPSLIGFRI
LQGLVSGPMI PGSQALLIMI FPASRRGTAL AIWSMTTLVA PICGPILGGY ISDNIAWEWI
FLINVPVGLL CAFLCWRGMN NRETPTRKVP IDTTGFMLLL VWVGALQVML DTGKDADWFN
SPAIVVETLV AIVGFIAWVI WELNEKHPIV DLSLFKSKNF ALGTVAFCLG YAVFFGSNLL
QPLWLQTQMH YIATWAGLVA APSGVVAVLL TPFAARIMQK VDARWTATLS LAAFALSFYM
RSGFTPDVDF KALVWPMLVQ GVAMSTFFLS MVTISLNGVS PQQLPSASGL SNFSRITAGS
FAASLTTTIW DRGESLHQNR IAESMASNDP AWLAAVDHMQ AAGLSHAQAV GAVTAQVVNQ
AYLLSTLDFF RASAWLAVLL IPCIWLTKKA MSGGGAHAAA D
|
|---|
| |