| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_3108 |
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| Symbol | secD |
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| ID | 5900563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caulobacter sp. K31 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010338 |
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| Strand | - |
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| Start bp | 3373422 |
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| End bp | 3375020 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641563611 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001684733 |
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| Protein GI | 167647070 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.2173 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGACCC TCTCCCGCTG GAAAGTCACC GCCGTCATAT TGTCGGTGAT TTTCGGCATC
GTCTTCTCCC TGCCCAACGT GCTGCCGCAG AAGACGCTCG ACGCGCTTCC CGGCTGGGTT
CCTCATCAGA AGCTCAATCT GGGTCTCGAC CTGCAGGGCG GGTCCTACCT GCTCTACGAG
GTCGATACCG ACGCGTTGCG CGCCGAACGC CTGACCAACA TGGTCGAGGA CGTGCGGACC
ACGCTGCGCA ACGACCAGAT CGAGTTTGGC GAACTGGGTG AAGCGGGCGG GGTGGTGCGG
GTTCGCATCA CCGACCCGGG CAAGGTGGAC CAGGCGGTCA GCCTGTTGCG CAAGTCGGTG
GGCGGCCCGC TGCAGGGCGC CATCGGCGGC CGCGACACGC GGATCGACAA CAAGGGCGAC
GGGCGGCTGG AACTGAGTTT CGTGCCCGAG GCCGCCAAGG CCGACGCAGC CAAGGCCGTG
GATCAGTCGA TCGAGACGAT TCGCCGCCGG GTCGACGCCA TGGGCACCAA GGAACCGACC
ATCACCCGTC AGGGCGTCAA CCGGATCGTC ATCCAGGCGG CCGGCGAGAG CGATCCGGCC
CGCTTGCAAG CCGTGATCGG CCAGACCGCC AAGCTGACCT TCCAGATGGT CGACGAGACC
GTCACGCCCG AGGACATGGC CGCCGGCCGC ATCCCGCCTG GCGTGATGGT GATCCCCGGC
GCCCAGGCCG GCGCGCCGCC GATCCCCGTT GCCAAGCGGG CCCTGGTGAC CGGCGAGGAC
CTGGTCGACG CCAACCAGAC CTTCGACCAG AACGGCGCGG CCGCCGTCGG CTTCCGCTTC
GGCGGTTCGG GCGCCCGCAA GTTCGGCGAC GCGACGACCC GCAACGTCGG CAAGCGCTTC
GCCATCGTGC TGGACAACAA GTACATCTCC GATCCGCGGA TCAACCAGCC GCTGCCGGGC
GGTTCGGGCA TCATCACCGG CAACTTCACG CCGGAAAGCG CCGCCGAGCT GGCCCTGCTG
CTGCGCTCGG GCGCTCTGCC CGCCAAGCTG AACCTCGAAG AACAACGCAC CGTGGGGGCC
GAGCTGGGCG CCGACGCCGT GCGGGCCGGC GCGATCTCGC TGGCCATCGG CGCGGCGGCG
ATGTTCGTGT TCATCATCCT GGCCTATGGC CTGTTCGGGA CGTTCGCGGC CGTCGCCCTG
TTCGTCAACG TGCTGCTGAT CATCGGCATC ATGTCGATGA CCCAGGCCAC CCTGACCTTC
CCCGGCATCG CCGGCCTGAT CCTGACCCTG GCGGTCGCGG TCGACGCCAA CGTGCTGATC
TACGAGCGGA TGCGCGACGA GGCGGCGGCG GGCCGATCGC CGATGTCGGC GGCCGACACC
GGCTATCGCC GGGCGTTGGT CTCGATCATG GACGCCAACA TCACCAGCGT GATCTCGGCC
CTGATCATGT TCTCCATGGG CGCCGGACCG GTCAAAGGTT TCGCCTGGAC GCTTCTCATC
GGCGTGTTCA CCTCTTTGTT CACCGCTATT CTCATTACCC AAGTGCTCAT CGGTTGGTGG
TTCAAGGTCA CCAAGCCGAA GAAGCTGCCG ATCGCCTGA
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| Protein sequence | MLTLSRWKVT AVILSVIFGI VFSLPNVLPQ KTLDALPGWV PHQKLNLGLD LQGGSYLLYE
VDTDALRAER LTNMVEDVRT TLRNDQIEFG ELGEAGGVVR VRITDPGKVD QAVSLLRKSV
GGPLQGAIGG RDTRIDNKGD GRLELSFVPE AAKADAAKAV DQSIETIRRR VDAMGTKEPT
ITRQGVNRIV IQAAGESDPA RLQAVIGQTA KLTFQMVDET VTPEDMAAGR IPPGVMVIPG
AQAGAPPIPV AKRALVTGED LVDANQTFDQ NGAAAVGFRF GGSGARKFGD ATTRNVGKRF
AIVLDNKYIS DPRINQPLPG GSGIITGNFT PESAAELALL LRSGALPAKL NLEEQRTVGA
ELGADAVRAG AISLAIGAAA MFVFIILAYG LFGTFAAVAL FVNVLLIIGI MSMTQATLTF
PGIAGLILTL AVAVDANVLI YERMRDEAAA GRSPMSAADT GYRRALVSIM DANITSVISA
LIMFSMGAGP VKGFAWTLLI GVFTSLFTAI LITQVLIGWW FKVTKPKKLP IA
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