Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caul_0794 |
Symbol | rpoB |
ID | 5898249 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Caulobacter sp. K31 |
Kingdom | Bacteria |
Replicon accession | NC_010338 |
Strand | + |
Start bp | 838718 |
End bp | 842800 |
Gene Length | 4083 bp |
Protein Length | 1360 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641561275 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001682423 |
Protein GI | 167644760 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.235631 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCAAT CCTTCACCGG CAAGAAGCGG ATCCGGAAGT CTTTCGGCCG CATCCCCGAA GCTGTGCAGA TGCCGAACCT GATCGAGGTT CAGCGCTCCT CCTACGAACA GTTCCTGCAG CGCGAGGTCC GTCCGGGCGT GCGCAAGGAC GAGGGGATCG AAGCGGTCTT CAAGTCCGTC TTCCCGATCA AGGATTTCAA CGAGCGCGCG GTGCTCGAAT ACGTCTCGTA CGAATTCGAA GAGCCCAAGT ACGACGTTGA GGAATGCATC CAGCGCGACA TGACCTTCGC GGCGCCGCTG AAGGTCAAGC TGCGGCTGAT CGTGTTCGAA ACCGAAGAAG AAACCGGCGC CCGGTCCGTC AAGGACATCA AGGAGCAGGA CGTCTACATG GGCGATATCC CGCTCATGAC CGACAAGGGC ACGTTCATCG TCAACGGCAC CGAGCGGGTC ATCGTCTCGC AGATGCACCG CTCGCCCGGC GTGTTCTTCG ACCACGACAA GGGCAAGACC CACGCCTCGG GCAAGCTGCT GTTCGCCGCC CGCGTGATCC CGTATCGCGG TTCGTGGCTC GACTTCGAGT TCGACGCCAA GGACGTGGTC TATGTCCGCA TCGACCGTCG CCGCAAGCTG CCGGCCACCA CCTTCCTCTA TGCCCTGGGC ATGGACGGCG AAGAGATCCT GACCACCTTC TACGACGTCG TGCCCTTCGA GAAGCGCACC GCGGCCGGCG CCGAAGGCTG GGCCACCCCG TACAAGCCCG AGCGCTGGCG CGGCGTGAAG CCGGAATTCG CCCTGATCGA CGCCGACAGC GGCGAAGAAG TGGCCGCGGC CGGCACCAAG ATCACCGCGC GTCAGGCCAA GAAGCTGGCT GACAATGGTC TCAAGACCCT GCTGCTGGCC CCCGAGGCCC TGACCGGCCG CTACCTGGCC CGAGACGCCG TCAACTTCGA GACCGGCGAG ATCTACGCCG AGGCCGGCGA CGAGCTGGAC GTCACCTCGA TCGAGGCTCT GGCGGCCCAA GGCTTCAGCA CCATCGACGT GCTGGACATC GACCACGTCA CGGTCGGCGC CTACATGCGC AACACCCTGC GCGTGGACAA GAACGCCGTC CGCGAGGACG CGCTATTCGA CATCTATCGC GTCATGCGTC CCGGCGAGCC GCCGACCGTC GAAGCCGCCG AGGCGATGTT CAAGTCGCTG TTCTTCGACG CCGAGCGCTA CGACCTGTCG GCCGTGGGCC GCGTGAAGAT GAACATGCGC CTGGAGCTGG ACGCTTCGGA CGAGATGCGC GTGCTCCGCA AGGAAGACGT GCTGGCCGTC CTGAAGCTGC TAGTCGGCCT GCGCGATGGC CGCGGCGAAA TCGACGACAT CGACAACCTG GGCAACCGCC GGGTGCGTTC GGTCGGCGAA CTGCTGGAAA ACCAGTACCG CGTCGGCCTG CTGCGCATGG AACGCGCCAT CAAGGAACGC ATGTCGTCCG TCGACATCGA CACCGTGATG CCGCACGACC TGATCAACGC CAAGCCGGCC GCGGCCTCGG TGCGTGAATT CTTCGGCTCC TCGCAGCTGT CGCAGTTCAT GGACCAGACC AACCCGCTGT CGGAGATCAC CCACAAGCGT CGTCTCTCGG CGCTTGGCCC GGGCGGTCTG ACCCGCGAGC GCGCCGGCTT CGAAGTCCGC GACGTTCACC CGACCCACTA CGGCCGCATC TGCCCGATTG AAACGCCGGA AGGCCCGAAC ATCGGCCTGA TCAACTCGCT GGCCACCCAC GCCCGCGTCA ACAAGTACGG CTTCATCGAG AGCCCCTACC GTCGCGTTGC CGACGGCAAG CCGCTCGAAG AGGTCGTCTA CATGTCGGCC ATGGAAGAGT CGAAGCACGT CATCGCCCAG TCCAACATCA AGGTGTTGAA CGGCGAGATC GTCGACGACC TGGTCCCCGG CCGGATCAAC GGCGAACCGA CCCTGCTCCA GAAGGAGCAA GTCGACCTGA TGGACGTGTC GCCGCGTCAG GTGGTTTCGG TGGCCGCGGC CCTGATCCCC TTCCTGGAAA ACGATGACGC CAACCGCGCC CTCATGGGCT CGAACATGCA ACGTCAGGCC GTGCCGCTGG TGCAGTCCGA CGCCCCGCTG GTCGGCACGG GCATGGAAGC CGTCGTCGCT CGCGACTCCG GCGCCGTGGT CATCGCCAAG CGCACCGGCG TCGTGGAGCA GATCGACGGC ACCCGTATCG TCGTCCGCGC CACGGAAGAA ACCGACGCCG CCCGCTCGGG CGTCGACATC TATCGCCTGA GCAAGTTCCA GCGTTCGAAC CAGTCGACCT GCATCAACCA GCGTCCGCTG GTGAAGGTGG GCGACAAGAT CAGCGCCGGC GACATCATCG CCGACGGTCC CTCGACCGAG CTGGGCGAAC TGGCCCTGGG CCGCAACGCG CTCGTCGCGT TCATGCCCTG GAACGGCTAC AACTTCGAAG ACTCGATCCT GATCTCCGAG CGCATCGTCC GCGACGACGT CTTCACCTCG ATCCACATCG AGGAATTCGA AGTCATGGCC CGCGATACGA AGCTCGGTCC GGAAGAAATC ACCCGCGACA TCCCAAACGT CGGCGAGGAA GCCCTGCGCA ACCTCGACGA AGCGGGCATC GTGGCGATCG GCGCCGAAGT CCAGCCGGGC GACATCCTGG TCGGCAAGGT CACCCCGAAG GGCGAAAGCC CGATGACGCC GGAAGAAAAG CTCCTGCGCG CCATCTTCGG CGAAAAGGCC TCGGACGTCC GCGACACCAG CCTGCGCCTG CCCCCGGGCG TCGCCGGCAC GATCGTCGAC GTGCGGGTGT TCAACCGCCA CGGCGTCGAC AAGGACGAAC GCGCCCTGGC CATCGAACGC GCCGAGATCG ACCGTCTGGG CAAGGACCGC GACGACGAAT TCGCGATCCT GAACCGCAAC ATCTCGGGCC GTCTGCGCGA ACTGCTGATC GGCAATGTCG CTCTGTCGGG TCCCAAGGGC CTGTCGCGCG GCCAGATCAC CGCCGAGGGC CTGGCTGAAG TCCAGCCGGG TCTGTGGTGG CAGATCGCCC TCGAGGACGA GAAGGCGATG GGCGAACTGG AAAGCCTGCG CCGTCTGTTT GACGAGAACC GCAAGCGCCT GGACCGGCGC TTCGAGGACA AGGTCGACAA GCTGCAGCGC GGCGACGAAC TGCCCCCGGG CGTGATGAAG ATGGTAAAGG TCTTCGTGGC CGTGAAGCGC AAGCTTCAGC CGGGCGACAA GATGGCCGGC CGTCACGGCA ACAAGGGCGT CATCTCGCGC ATCCTGCCGA TCGAGGACAT GCCGTTCCTC GCCGACGGGA CGCACGTGGA CGTCGTTCTG AACCCGCTGG GCGTGCCTTC GCGCATGAAC GTCGGTCAGA TCTTCGAAAC CCACCTGGGT TGGGCCTGCG CCGGTCTCGG CAAGCAGATC ACGACCCTGC TCGAGGACTG GCAGGCCGGC GGCCAGAAGC AGGCCCTGAT CGATCGTCTG ACCGAAATCT ACGGCCCGGA CGAGGAACTG CCGGAAACCG AGGAAGAGCT GGTCGAACTG GCTCGCAACC TCGGCAAGGG TGTTCCGATC GCCACCCCGG TGTTCGACGG TGCGCGTATC GGCGACATCG AGGACCACCT GCGCATGGCG GGTCTCGATC CGTCGGGCCA GTCGATCCTG TACGACGGCC AGACCGGCGA GCAGTTCAAG CGTCCGGTCA CGGTCGGCTA CATCTACATG CTGAAGCTGC ACCACCTGGT CGACGACAAG ATCCACGCCC GTTCGATCGG TCCGTACTCG CTCGTCACGC AACAGCCGCT GGGTGGTAAG GCCCAGTTCG GCGGTCAGCG CTTCGGGGAA ATGGAAGTGT GGGCTCTGGA AGCCTACGGC GCGGCCTACA CCCTGCAGGA AATGCTGACG GTGAAGTCCG ACGACGTGGC CGGCCGGACC AAGGTCTACG AGTCGATCGT CCGCGGCGAC GACACGTTCG AAGCCGGTAT CCCGGAAAGC TTCAACGTGC TGGTCAAGGA AATGCGCTCG CTCGGCCTGA ACGTCGAGCT GGAGAACAGC TGA
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Protein sequence | MAQSFTGKKR IRKSFGRIPE AVQMPNLIEV QRSSYEQFLQ REVRPGVRKD EGIEAVFKSV FPIKDFNERA VLEYVSYEFE EPKYDVEECI QRDMTFAAPL KVKLRLIVFE TEEETGARSV KDIKEQDVYM GDIPLMTDKG TFIVNGTERV IVSQMHRSPG VFFDHDKGKT HASGKLLFAA RVIPYRGSWL DFEFDAKDVV YVRIDRRRKL PATTFLYALG MDGEEILTTF YDVVPFEKRT AAGAEGWATP YKPERWRGVK PEFALIDADS GEEVAAAGTK ITARQAKKLA DNGLKTLLLA PEALTGRYLA RDAVNFETGE IYAEAGDELD VTSIEALAAQ GFSTIDVLDI DHVTVGAYMR NTLRVDKNAV REDALFDIYR VMRPGEPPTV EAAEAMFKSL FFDAERYDLS AVGRVKMNMR LELDASDEMR VLRKEDVLAV LKLLVGLRDG RGEIDDIDNL GNRRVRSVGE LLENQYRVGL LRMERAIKER MSSVDIDTVM PHDLINAKPA AASVREFFGS SQLSQFMDQT NPLSEITHKR RLSALGPGGL TRERAGFEVR DVHPTHYGRI CPIETPEGPN IGLINSLATH ARVNKYGFIE SPYRRVADGK PLEEVVYMSA MEESKHVIAQ SNIKVLNGEI VDDLVPGRIN GEPTLLQKEQ VDLMDVSPRQ VVSVAAALIP FLENDDANRA LMGSNMQRQA VPLVQSDAPL VGTGMEAVVA RDSGAVVIAK RTGVVEQIDG TRIVVRATEE TDAARSGVDI YRLSKFQRSN QSTCINQRPL VKVGDKISAG DIIADGPSTE LGELALGRNA LVAFMPWNGY NFEDSILISE RIVRDDVFTS IHIEEFEVMA RDTKLGPEEI TRDIPNVGEE ALRNLDEAGI VAIGAEVQPG DILVGKVTPK GESPMTPEEK LLRAIFGEKA SDVRDTSLRL PPGVAGTIVD VRVFNRHGVD KDERALAIER AEIDRLGKDR DDEFAILNRN ISGRLRELLI GNVALSGPKG LSRGQITAEG LAEVQPGLWW QIALEDEKAM GELESLRRLF DENRKRLDRR FEDKVDKLQR GDELPPGVMK MVKVFVAVKR KLQPGDKMAG RHGNKGVISR ILPIEDMPFL ADGTHVDVVL NPLGVPSRMN VGQIFETHLG WACAGLGKQI TTLLEDWQAG GQKQALIDRL TEIYGPDEEL PETEEELVEL ARNLGKGVPI ATPVFDGARI GDIEDHLRMA GLDPSGQSIL YDGQTGEQFK RPVTVGYIYM LKLHHLVDDK IHARSIGPYS LVTQQPLGGK AQFGGQRFGE MEVWALEAYG AAYTLQEMLT VKSDDVAGRT KVYESIVRGD DTFEAGIPES FNVLVKEMRS LGLNVELENS
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