Gene Cagg_3250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_3250 
Symbol 
ID7267397 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp3938473 
End bp3941115 
Gene Length2643 bp 
Protein Length880 aa 
Translation table11 
GC content54% 
IMG OID643568071 
Productmulti-sensor signal transduction histidine kinase 
Protein accessionYP_002464544 
Protein GI219850111 
COG category[T] Signal transduction mechanisms 
COG ID[COG5002] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACACG TCTTAAACCA CTGGTTACAA ACGCAGCAAA ACAACCTGTT GCAATGGTGG 
TCTCATCTAC ACGATGTCAC GACAGGTTCA GTGGCGATTC TGTCTTACCT TGATCCCCAA
CGGTTTGCTC GTGCGCTCAC TGCTGCGGCG AATGGCGATG ACCAATCGCT CCGTGCGTTG
TTCAGCGAGT TGATCGCCGA TCAAAGCGAT GCTGATTTGC CCACGCTTGT GCGCCATCTC
AATCAGTTGC ATCGGATTGC ACGCACAGCC CTGCTGCACG ATCATGCCGA TCCGGCTACG
CTCGATTCGC TCGCCCAGTT GTTCGAGCAC GCGCTTGTAA CCCTGGCCGA GGTATGGTCG
GAACACACGA ACCAATTGAT CCATGAGCGC GAATTTATTG CCGCTAGTCT CGATGCTGCC
TCAGCCGCCG CCGACCAGCG TGCCCTCCAA CTAAAAGCGC TGAATGACAT TTCACAACGT
CTTTCGGCAA CGCTCGACCA CGATGCATTG ATCGAGATCG TGATCGATAG CCTACACCGC
CTCACCGATG CTTATCACGT TGCCCTTTGG CTGACCGATA GCGACCGGCG GTTTCGAGTA
GTTGCCTGTC GTGGGAGCAC CGAAGGGCCT TCCGTCGGGT ATGTCTTACC GGAGACCAAC
CCGGTGATCC AGGCTGCATT TACCGGTACG TCCGGCACAT TTTGGCCGAC TGCACCAACC
GATCCCAGCC ATCAATGGCT TTTAGCCGGA TGTAGCGTGC TGGTGATTCC AATGACCGGT
GGCGAAGGGG TGATCGGTGC AGTGACCCTG CAAGAACGTC ATAATCCACT CGATCTACGC
TTTATGCAGG ATTTGGCGCA GAGCATCGCC AGCCAGGCTG CAATTGCATT GCAGAATGCT
GATTTGTACC ATACGATCCG GACCCTCAAC GCCGAACTTG AACAGCGTGT GATCGAACGC
ACACACGAAT TGGAGGAGGA GAAAGATCGC CTCGCGACCC TCCACGCGAT TGCCTCTGAA
GTAAATCGCT CGCTTGATCT TGACCTTATT CTGAATAATT CGCTCGAAAT GCTGGCACAT
ATCGTGCAAG CTGAACATGC CTCGATCTTA CTCACCGAAG AGGAATCGCC GAGCTTGCTG
GCAACACGGG CTATTTTGGG GCGAAAAGTC ACCCCGGATA ATACGGTTCG TTTTGCAATT
GGGCAGGGAA TTGCCGGCTG GGCCGCGCAA CACGGGCAGA CGGTGTTGGT GAACGATGTG
CAACAAGACG ATCGGTGGGT AACGATACCC GGTAGTAACC GCAAGCGTGA AGGCTCGATG
ATCGCGGTCC CACTCTTCGT GCAGGGTGAG GTGCTCGGTG TGATGACCCT CTCCCATTCG
CGCCCCAACT TTTTTCACGA AGGGCACGTG CGGTTGCTCA ACGCCTGCGC CGGTACCATC
GCGATTGGGA TCAATAACGC AAAGCTGTAC CGTATGATTA TCGATGAGTC GAACCGGCGC
TCTGAATTGC TCGAACGTCA ACAGCGTGAG ACGAGCCAGA TTACGGCCAT CCTGCAAAGC
CTGCTCGATG GTGTACTGGT ATGCGACATC CACGGTAGTA TCCTCAGCGT GAATCAGGCA
GCCGGTCGCA TTTTGCACCG TCCAATTGAA GAACTCCTGC TCTGGAATAT GCACGATCTG
ATTCAGCATT GCCTCAGCAC CCACGCTGCG GACTTGCCGC TCGAGGAACT CTTTCGTCGG
CCATTGACCA CTGATGGCAC ACCGCGTACC TTTTCGACGA CGACGACGAT TGGGAATGCG
ACGATCAATG TTTCACTGAG TCCGGTGCTC AACGAAAATG ACCGTACCCT CGGTGCGTTG
CTGGTACTGC GCGATATTAC CCGCGAGGTC GAGGCCGACC GGATGAAAAA CGAGTTTATC
GGCACGATGT CACACGAACT GCGTACCCCC ATGACGGCCA TCAAAGGGTT TACCCAGTTG
TTGGCGATGG GTGGTCTTGG TCAGTTGAAT GACACCCAAC GCGAGTTTGT GAATACGATT
TACAATAATA CCGAGCGCAT GATCAACCTT ATCAACGATG TGCTCGAAAT TACCAAGATC
GAGTCGGGTA GTATCGAACT CGAATGGCGC TCACTCCATC TTGCCGAGGC GCTAAGTGGT
GTGATTGCCG AATTACAATC GCACATTAGC CAACGCCAGC ATCAATTGAC TATTTCGATT
CCACCCGGTT TACCACTCAT CCGGGCCGAC GCAATGCGCT TGCACCAAAT CCTCTATCAC
GTGCTACTCA ATGCCGTAAA GTACACGCCT GCCGGTGGCA AAATCACCAT TGCCGCCCGC
GAAATTCTGA ATGTTGATTT TCCTGAACCG GTGCGTAGTA TACTGCATAC GAATCACCGC
TATCTGTTGC TCAGTATCAG TGATACCGGT GTGGGGATTC GCCCTGAAGA TCTCCCGCGC
ATTTTCGACC GCTTCTTCCG CGCCGAAAAC CCGCTTAAAG TAGAAGCCGG TGGAACCGGT
CTCGGTCTGT CGATTGTTAA ACCACTGGTG CAATTGCTCG GTGGGCACAT CTGGGTTGAG
AGCACAGTTG GTCAAGGGAG TACCTTCTAT ATTGCGCTTC CGGTTGCTGC CGAACGGGCT
TAA
 
Protein sequence
MKHVLNHWLQ TQQNNLLQWW SHLHDVTTGS VAILSYLDPQ RFARALTAAA NGDDQSLRAL 
FSELIADQSD ADLPTLVRHL NQLHRIARTA LLHDHADPAT LDSLAQLFEH ALVTLAEVWS
EHTNQLIHER EFIAASLDAA SAAADQRALQ LKALNDISQR LSATLDHDAL IEIVIDSLHR
LTDAYHVALW LTDSDRRFRV VACRGSTEGP SVGYVLPETN PVIQAAFTGT SGTFWPTAPT
DPSHQWLLAG CSVLVIPMTG GEGVIGAVTL QERHNPLDLR FMQDLAQSIA SQAAIALQNA
DLYHTIRTLN AELEQRVIER THELEEEKDR LATLHAIASE VNRSLDLDLI LNNSLEMLAH
IVQAEHASIL LTEEESPSLL ATRAILGRKV TPDNTVRFAI GQGIAGWAAQ HGQTVLVNDV
QQDDRWVTIP GSNRKREGSM IAVPLFVQGE VLGVMTLSHS RPNFFHEGHV RLLNACAGTI
AIGINNAKLY RMIIDESNRR SELLERQQRE TSQITAILQS LLDGVLVCDI HGSILSVNQA
AGRILHRPIE ELLLWNMHDL IQHCLSTHAA DLPLEELFRR PLTTDGTPRT FSTTTTIGNA
TINVSLSPVL NENDRTLGAL LVLRDITREV EADRMKNEFI GTMSHELRTP MTAIKGFTQL
LAMGGLGQLN DTQREFVNTI YNNTERMINL INDVLEITKI ESGSIELEWR SLHLAEALSG
VIAELQSHIS QRQHQLTISI PPGLPLIRAD AMRLHQILYH VLLNAVKYTP AGGKITIAAR
EILNVDFPEP VRSILHTNHR YLLLSISDTG VGIRPEDLPR IFDRFFRAEN PLKVEAGGTG
LGLSIVKPLV QLLGGHIWVE STVGQGSTFY IALPVAAERA