| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cagg_1356 |
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| Symbol | rho |
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| ID | 7268648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chloroflexus aggregans DSM 9485 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011831 |
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| Strand | - |
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| Start bp | 1680458 |
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| End bp | 1681711 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643566199 |
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| Product | transcription termination factor Rho |
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| Protein accession | YP_002462699 |
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| Protein GI | 219848266 |
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| COG category | [K] Transcription |
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| COG ID | [COG1158] Transcription termination factor |
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| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00013646 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000585861 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTTCAG GAATTGCCGA AACCGCCGAG AAGGTTCGTC GTCGGCGTCG CCGGGTGAAT
GGTGAGGCGA GCGAATCTAC GACCAATGAA ACCGTGGCGG TGACCACTCC ACCCACAACC
ACAACGGTAA TTGAAGAACC GGTGACGATG CAAGGTTCTG GTATCCTCGA AATCGTTCCT
GATGGTCACG GTTTTCTCCG CAATCCTCGC CTGACACCTG GCACCGATGA TGTCTACGTG
GCACAGTCGC AAATTCGTCG TTTTAACCTG CGTACCGGCG ATATGATCGA AGGACGGGTG
CGTCCGCCGA AAGAGGTCGA GCGTTATCCG TCGCTGCTCT ATGTCGAGCG GGTGAATGGC
TTGCCGGCGG AAGCTGCACA AAAACGGCCA CTCTTCGAGC ATTTGACACC GATCCATCCC
AATGTCCAAA TTGTGCTCTC GACCGAGGCG AATATTCTGC CTACCCGGAT TGTTGATGTC
ATTGCGCCGA TTGGGCGTGG GCAGCGCGGG TTGATCGTTG CGCCACCCAA GGCCGGGAAG
ACGATGCTCC TGAAGGCTAT TGCCAACGGT ATTACGACCA ATGCACCCGA TATTCAGTTG
ATCGTGCTGC TGATCGGTGA GCGACCCGAA GAAGTGACCG ATATGCGGCG GTCGGTGCAG
GGCGAAGTGG TGGCCGCTAC CTTTGATGAA CCGGTTGAGC AGCATATTAA GGTTGCTGAA
TTGGTACTGG AGAAGGCAAA ACGACAAGTT GAGCACGGTC GCCACGTGGT GATCTTGATG
GACTCGCTGA CCCGCTTGAC CCGTGCCTAC AATATCGCGA TGCCGCCTAG TGGACGAACA
CTTTCCGGTG GTGTCGATCC CGCTGCCCTC TATCCGCCAA AACGTTTCTT CGGCTCGGCT
CGCAATATTG AAGATGGTGG TTCCCTCACT ATTATTGCGA CCTGTCTGGT CGATACCGGT
TCACGGATGG ATGATGTGAT CTACGAAGAG TTCAAAGGCA CCGGTAACAT GGAACTGCAT
CTCGATCGTA AACTGGCCGA GAAGCGCATC TTCCCCGCCG TTGATATTCA GCGCTCGGGT
ACGCGCCGTG AGGATCTGTT GCTCGATCCG GTAACGCTGC GCCAGAGCTG GATGTTGCGA
CGGATGGTCA GCATGGTTGG TGAGAATGAA GGCGCTGAGC TGATGCTGAC CCGGATGGCG
AAGACGAAGA GCAACGCTGA GTTTTTGGCG TCGCTCGGTA AGGTGGGTTC GTGA
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| Protein sequence | MTSGIAETAE KVRRRRRRVN GEASESTTNE TVAVTTPPTT TTVIEEPVTM QGSGILEIVP
DGHGFLRNPR LTPGTDDVYV AQSQIRRFNL RTGDMIEGRV RPPKEVERYP SLLYVERVNG
LPAEAAQKRP LFEHLTPIHP NVQIVLSTEA NILPTRIVDV IAPIGRGQRG LIVAPPKAGK
TMLLKAIANG ITTNAPDIQL IVLLIGERPE EVTDMRRSVQ GEVVAATFDE PVEQHIKVAE
LVLEKAKRQV EHGRHVVILM DSLTRLTRAY NIAMPPSGRT LSGGVDPAAL YPPKRFFGSA
RNIEDGGSLT IIATCLVDTG SRMDDVIYEE FKGTGNMELH LDRKLAEKRI FPAVDIQRSG
TRREDLLLDP VTLRQSWMLR RMVSMVGENE GAELMLTRMA KTKSNAEFLA SLGKVGS
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