Gene Cagg_0318 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_0318 
Symbol 
ID7267499 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp400438 
End bp401232 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content58% 
IMG OID643565186 
Producthemolysin A 
Protein accessionYP_002461700 
Protein GI219847267 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1189] Predicted rRNA methylase 
TIGRFAM ID[TIGR00478] hemolysin TlyA family protein 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.996063 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCGGC AACGGCTTGA TACCTTGCTG GTAGAGCGTG GCTTGGCCGA GACGCGCGCT 
AAAGCACAGG CGCTGATTAT GGCCGGTCAG GTGTTGGTAA ACGGGCAGGT GCAAACGAAA
GCCGGAACCC AAGTTGCCGC CGATGCCCAG ATTGAGGTGC GCAGTGGCCT ACCTTACGTT
AGTCGTGGTG GTTTCAAGTT GGCCCATGCG CTTGACCAAT TCGAGCTTGA CCCGACCGGT
TTGATCGCCC TTGACGTTGG TGCATCCACA GGTGGCTTTA CCGATGTCTT GTTACGGCGT
GGAGCTGCTC AGGTGGTGGC GATTGATGTT GGCTATGGTA TTCTCGACCA CCGCTTGCGC
AATGATCCGC GGGTGATCGT CCTTGAACGC ACCAATATTC GCTACCTGAC GGCATTACCC
GACAATATGC GCGCGGATTG TGCCGTGATC GATGTTAGTT TCATCTCTCT CCGCCTCGTC
TTACCTGCCG TACAACGGTT GATCACACCG GAAGCGTGGA TTGTGGCGCT GATAAAGCCG
CAGTTTGAAG CTGGCCCCCA ACTCGTCGGT AAGGGTGGTG TTGTGCGTGA CCCGGCAGTG
CATGCGCAGG TGATCCGCGA TGTCGTCGCG TTTGCCGTCA CTCAACAGCT CAACCCGGCC
GGTCTGACGC GATCACCGAT CACCGGTCCG GCGGGGAACG TCGAGTTTCT CGTGTTGTTC
CATCCCAAGC GGCCACCGGT TACCGGCGAA TCGGCGATAG AGCGTGTGTG TTCGCCTGAA
CCGTCCTCTC GATAG
 
Protein sequence
MTRQRLDTLL VERGLAETRA KAQALIMAGQ VLVNGQVQTK AGTQVAADAQ IEVRSGLPYV 
SRGGFKLAHA LDQFELDPTG LIALDVGAST GGFTDVLLRR GAAQVVAIDV GYGILDHRLR
NDPRVIVLER TNIRYLTALP DNMRADCAVI DVSFISLRLV LPAVQRLITP EAWIVALIKP
QFEAGPQLVG KGGVVRDPAV HAQVIRDVVA FAVTQQLNPA GLTRSPITGP AGNVEFLVLF
HPKRPPVTGE SAIERVCSPE PSSR