| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_1387 |
|---|
| Symbol | |
|---|
| ID | 3746571 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium chlorochromatii CaD3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007514 |
|---|
| Strand | + |
|---|
| Start bp | 1851699 |
|---|
| End bp | 1853351 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 637773923 |
|---|
| Product | ATP-dependent OLD family endonuclease |
|---|
| Protein accession | YP_379688 |
|---|
| Protein GI | 78189350 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3593] Predicted ATP-dependent endonuclease of the OLD family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.398618 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTCTA TTTTGTATGG GGTTGGCAAT AAGTTTATTC AGACTAACAC CTTTGAAAGG
AATGATTTAC ATAATTTGGA CTATACTAAC CAAATTAGAA TACGAATTGA ATTACAAGGT
TCTGATTTTA CTTGTCCTCA ATATTGGGAT AGACAAAGTA ATTCTTACCG AACAACAAAG
AGTATTACAG GAACTTATGA AATTACAACT GAAATAGATG ATAGCGAACT AAAATCAGGA
ATGCAACCTT CAATGTTTGG GATGAACAAA CATTACAATA TTTTCTACAT CAATTTTCAC
AACATCAAAG ATGAAATCAA AACTCAAAGA ACAAGTTGGG GCAATTTGAC TTCATTCTTA
GCCAAACACA TCAAAAGTAT TGTAGATACT GATACTTCAA TGGCAGCCAA AAAAGAAGAT
TATGAAAATG AAGTAGAATT GGCGACCGAT AAAGTCCTTA AAAACTCTCA ACTAAGTGCT
TTTATAGACA AGATTAAGGA AAACTACTCT ACCAATTTGA GAAATAATAG TTGTGAAGTG
AAATTTGGTT TACCCGACTA TGAAGATATT TTTCTACAAA TGATTTTTAA AGTTGGTTTG
AATGGTGATA ACGCAAATTT AATCCCAATT GACCACTTTG GAGATGGCTA TATCTCAATG
TTTGTTATGG CAGTTATTCA GGCTATTGCA GAAAGCAATA CAGATGATAG GTGTTTGTTT
CTGTTTGAAG AACCTGAAAG TTTTTTACAC GAAAACCACC AAGAATATTT TTACAAGACA
GTTTTATGCA ATTTAGCAGA AAAGGGACAT CAAGTAATTT ATACTACTCA TTCGGATAGA
ATGGTTGATA TTTTTAATAC TAAAAGTATT ATTCGGATAG AGTTAGAGGA ACAAGACAAG
CAAACTGTTG TGAAGTATAA TAATGTTGGT GAATTTTCGC CTACAATGCC TACAAATAGT
AACGGACAAG AAATTATATC TTTTGCCAAC TTCAATAGTT ACATTAAATC AGTTGAACCA
AACTTAAATA AGATTTTATT TAGTCGCAAA GTTGTATTAG TAGAAGGTCC GAATGACATT
TTAGCTTACA AAATCGCTAT TGAAAGGGAA GTTGAGAAAG CACACGGTGA TAAGAAGTAT
GCCGAAACAT ATCTTAGTTT TCTAAACATT GCTTTTGTTG TACATCACGG AAAAGCAACA
GCATATTTAT TGATTGAGTT ATGCAAACAT TTTGGATTAG ACTATTTCGT AATTAACGAT
TGGGATTTTG AAACTGATTT TGTAACGGAT CTCGCAAATT TTCAAGATGA AAACACTTTA
AAACAAGATA ATCTGTATTT AAAAGACGGT GCAGATGACA GAAGCTCAAA TTCAAAAGCA
ATGATTACAA CAAATTGGAA ACTACTAAAC AATTCGGGTA TTGATAAAAT TCACTTTAAT
ATTCCTAAAC TTGAAAGAGT TTTAGGTTAT CAATCTGACG ATAAAGATAG TTTAGGCATA
TTGAATACTG TTCAGAAATT GATATACTAT ACTGAAACCT TTTTACCTAC AAAGTTGAAG
GAGTTTTTAG AGTTGGACAA ATTGACTAAC CTAACAGAAA ACGTAGTTGA AACAGCAAAT
AGCGAAGTTG ATACAGATGA ACTGCCATTC TGA
|
|---|
| Protein sequence | MNSILYGVGN KFIQTNTFER NDLHNLDYTN QIRIRIELQG SDFTCPQYWD RQSNSYRTTK
SITGTYEITT EIDDSELKSG MQPSMFGMNK HYNIFYINFH NIKDEIKTQR TSWGNLTSFL
AKHIKSIVDT DTSMAAKKED YENEVELATD KVLKNSQLSA FIDKIKENYS TNLRNNSCEV
KFGLPDYEDI FLQMIFKVGL NGDNANLIPI DHFGDGYISM FVMAVIQAIA ESNTDDRCLF
LFEEPESFLH ENHQEYFYKT VLCNLAEKGH QVIYTTHSDR MVDIFNTKSI IRIELEEQDK
QTVVKYNNVG EFSPTMPTNS NGQEIISFAN FNSYIKSVEP NLNKILFSRK VVLVEGPNDI
LAYKIAIERE VEKAHGDKKY AETYLSFLNI AFVVHHGKAT AYLLIELCKH FGLDYFVIND
WDFETDFVTD LANFQDENTL KQDNLYLKDG ADDRSSNSKA MITTNWKLLN NSGIDKIHFN
IPKLERVLGY QSDDKDSLGI LNTVQKLIYY TETFLPTKLK EFLELDKLTN LTENVVETAN
SEVDTDELPF
|
|---|
| |