Gene Caci_8916 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_8916 
Symbol 
ID8340309 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp10327940 
End bp10328452 
Gene Length513 bp 
Protein Length170 aa 
Translation table11 
GC content70% 
IMG OID644962006 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003119570 
Protein GI256398006 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02983] RNA polymerase sigma-70 factor, sigma-E family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0707335 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.329972 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCACAGG AACAGGACTT CGACGAGTTC TACCTGGGGT CGGTCCGGAG GGTGACGGCG 
CAACTCGTCG CGATGCTGGG CGACCCGGTG GAGGCCGAGG ACGCGGTGCA GGAGGCGTAC
GCCCGGGCCT GGCAACGCTG GGATTCGGTG TCGCGGATGG ACGATCCCGT CGCCTGGGTG
CGGCTGGTGG CCTATCGAAT CAAAGTGTCG TCGTGGCGGT CCGCCGTGCG GCGCACCGTC
GCACACAGAC GGCACGGACC GCCACCGGAC GTGCCGGACC TGAGCCCGGA CTCGGTGGCC
CTGGTCACCG CCCTGCGGGG CATCCCCGAG GCACAGCGCC GAGCGATCGT CCTCTACCAC
CTGGCCGGGC TGACCGTCGA GCAGGTCGCA GCCGAGGTCG GAGCACCGGT CGGCACGGTC
AAAGCCCGGC TGTCGCGAGG CCGAGCAGCG CTGGCGCAAG TACTGAGCGA ATCGAAAGAC
GGAGACCTGA AGGGGAGGCC CAGCTATGCC TGA
 
Protein sequence
MSQEQDFDEF YLGSVRRVTA QLVAMLGDPV EAEDAVQEAY ARAWQRWDSV SRMDDPVAWV 
RLVAYRIKVS SWRSAVRRTV AHRRHGPPPD VPDLSPDSVA LVTALRGIPE AQRRAIVLYH
LAGLTVEQVA AEVGAPVGTV KARLSRGRAA LAQVLSESKD GDLKGRPSYA