| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8728 |
|---|
| Symbol | |
|---|
| ID | 8340120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 10119690 |
|---|
| End bp | 10121354 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644961819 |
|---|
| Product | PKD domain containing protein |
|---|
| Protein accession | YP_003119384 |
|---|
| Protein GI | 256397820 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2247] Putative cell wall-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.228973 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATGTCA CGAACAAGGT TCGGCTGGCT CTCGCCGCCG TAGCCGCGTC CGCTGTCAGC
ATGGGTGTGG CGGCGCCTTC CTTCGCGGCG GACGCTCCGG CGTCCACTGC GACCCCGGCT
CCGATCCCGG TGCCCATCGG GCCTGTGTGG GCTCAGCTGC AGATCCACTC GGACTCCGGT
TCGGCGAACC CGTTGGCGAC GGATTTCGTG ATCCAGGCCA AGGACACGAT GCCCGGTGCG
AAGCTGACCT ACACCCTGGA CTTCGGGGAC GGTTCGAGCC CGGTCAGCGG TCCGGTGATC
GCCGGTTCCT CGGGCACCGT CACCGTCCAG CACATATATA AGGCCACGGG TACGTACCCG
GTGAAGCTGT CCGTCTCCGA CGGCACGCAC TCGGTGGACC TGGCGAAGTC GTACACCGCC
TCCGTCAGCC GGCAGGGCCC GACCGCCGCC GTCACGGTGA CGACCAGTCC CGAATCCCTG
ACGGCTCTGG CGGACCTGTC CCAGTGCGCG CCGGCCGCGG TTCCGGCCGA GCAATCCATA
GCCCTGATAC GCCTCAACTG GGGTGACGGG TCGAGCACCG ACATCAGGAC TCCGACCGCG
AGGGTCCTTC AGATCCCGGT CGCGCACACG TATAAAGCGG CTGGTTCCTA CGGCGTCGTG
ACCCAGGTCG TCGACCAGGA CGGCGCCACG GCGACCACGA CCGAGCAGAT ATCCGTCGGC
CCGCCGACGA CCGGGGGCAC CGCGGTCACG CGGGTCGCCG GCGCCGACCG CTACCGGACC
GCGATCGCGA TCTCCTCGAA GCTGGCCGCG GGTTCCGCGC CGGCGGTCGT GCTGGCCACC
GGCGAGGCGT TCCCGGACGC GCTGGCTGGC GTGTCGCTGG CGAAGCAGGT CGGCGGTCCG
CTGCTGCTGA CCCCGAGCGC CGCTCCCGAC GCCGCGGTCA CCGCCGAGAT CAAGCGGGTC
CTCAAGCCGG GCGGCACGGT CTACGTGCTC GGCGGTACGA ACGCCGTCTC CCCGGCGGTC
GTCAGCGCGC TGGGTGCGGT GACCGTGACC CGGATCGGCG GCGCGGACCG CTACGAGACC
GCGCTGAGGA TCGCCGACCG ACTCGGCGAC CCGTCGAACG TGGTGCTGGC GACCGGCGCG
GACTACGCGG ACGCCCTCGC GGCCGGCCCG TACGCCTCCG ACGTCTTCGC CGTTGACGCC
TCGCACCCGG CCGCGATCCT GCTGACCGCG ACCACACAAA TGTCGCCGGC GGTTCAGGCC
TATGTGAAGA AGGCGCACGC CGTCGCGGCG GTCGGCGGCC AAGCGGTCAC CGCGGCCAAT
AACGCGCACA TCTCCCTGGC GCCCCACGCG AGCTTCAGCG GCTACGACCG CTACTTCACG
GCGGCCATGG TCGCCGCCGC CTTCCAGGGC GAGCACACCG CGGGCGTCGC CACCGGCGAG
AACTACGCCG ACGCCCTCAC CGGCGCGGCC TCGCTGGCCC AAGCCGGCGG CCCTCTGGTG
CTCACCCAGA CCCACCTGCT CACCCCGGCC GCCTGGCACG CCCTGCAGGG CATCGAGGCC
TCGGTCGGCG CCACCGGCAC CGTCGAGGTC TTCGGCGGCC CGGCCGCCGT CAGCACCGCC
ACGGTCGCGC AGATCGTCGA AGCAGTCCAC GGACACATGG CCTGA
|
|---|
| Protein sequence | MHVTNKVRLA LAAVAASAVS MGVAAPSFAA DAPASTATPA PIPVPIGPVW AQLQIHSDSG
SANPLATDFV IQAKDTMPGA KLTYTLDFGD GSSPVSGPVI AGSSGTVTVQ HIYKATGTYP
VKLSVSDGTH SVDLAKSYTA SVSRQGPTAA VTVTTSPESL TALADLSQCA PAAVPAEQSI
ALIRLNWGDG SSTDIRTPTA RVLQIPVAHT YKAAGSYGVV TQVVDQDGAT ATTTEQISVG
PPTTGGTAVT RVAGADRYRT AIAISSKLAA GSAPAVVLAT GEAFPDALAG VSLAKQVGGP
LLLTPSAAPD AAVTAEIKRV LKPGGTVYVL GGTNAVSPAV VSALGAVTVT RIGGADRYET
ALRIADRLGD PSNVVLATGA DYADALAAGP YASDVFAVDA SHPAAILLTA TTQMSPAVQA
YVKKAHAVAA VGGQAVTAAN NAHISLAPHA SFSGYDRYFT AAMVAAAFQG EHTAGVATGE
NYADALTGAA SLAQAGGPLV LTQTHLLTPA AWHALQGIEA SVGATGTVEV FGGPAAVSTA
TVAQIVEAVH GHMA
|
|---|
| |