Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_8635 |
Symbol | |
ID | 8340017 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 10011916 |
End bp | 10016385 |
Gene Length | 4470 bp |
Protein Length | 1489 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644961717 |
Product | YD repeat protein |
Protein accession | YP_003119292 |
Protein GI | 256397728 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.128218 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCGTC CGACGGGGTG GGATGTTCTG GGGTTGGATG GGGATCCGAC TCCCGGCGTG GTGGAATCGG TGCAGGCGCT GGCGAAAGCC TTCGGGGACT TTGCCCACGA TGCGGAAGCG GCGTATCACA GCCTGAACTC GTTCGGGTCG GATGCTACGG CGTTGCAGTG GGTGGGTCAG ACTGCTGATG CGTTCAAGGG CCAGTTCGGT CCGTTGCCGG GGCGGCTGCA GAAGCTGTAC ACGTCCTACA GCGAAGCCTC CGATGCGCTG TCGGCGTATG CGCCGCAGCT TCAGGCGGCG CAAACCAAAG CCGACACCGC GCTGCGTCAG GCACAAGACG CCAACTCGAA TCTGCAACGC GCCACCAGCA ACGCCAACAA CGCTGCCACT GATTTGAAGA CGGCACAGCA GAGCCATGCC ACAACGCCGA ACCCGCAGGC TGTTACGGAT GCCCAGACCG CGCACGACAC CGCGCAGACC AACCTGAACA ACGCCAAAGC CCACATGGCC GCGTTGGCCA AGCAAGCCAA CGACGCCTAC AACGACCGCA TCAACGCGGC GAAGACCTGT GGCAGTGCCC TGCATCACGC CCAATCCGAC GGCATCCACA ACAAACACTG GTGGGAACAC GTCGGCGAGG TCCTGTCCGA AGTCGGCGGC GAAATCGCCG ACATCGCCAA CGAACTCGCC CCCTTCCTCG ACATCCTGGC GCTGGCCACC TCCTGGATCC CCGGCGTCGA CGTCGTCACC GCCGCCCTCG CCGAAGCCGA CAACATCATC GCCATCGCCG GCACTGCCAT GAAGATCACC GGCGACGCGA TGCAGGGCCA CTGGGGCGAC GCGCTCATGG GCGCCGGGAT GCTCGGCCTA CAGTTCGTCG GCGGACGCAT GCTGGGCAAG CTCGGGGGCG AGGCCGAAGG CGAGGGGCGC AACCTCCTGG GCAGCGCGGA GAAGGACGCT GAAGGCGATG CGGCTTCAAC CGCCGAGAGG GGTGGCCAGG AGGTCGACGG CAATGCCGGC GCCACCACGG ACGGCGACCC CGTCGACGTG GTCTCGGGCC AGATGCTGAC CTGGGACGAC GACGTCGTGC TGCCGGGCGT CCTGCCGCTG ATCCTGCGCC GCGCCTACGC CTCGAAGTAC GACACCGGGC GCCTGTTCGG ACCCGGCTGG GCCTCGACGC TCGACCAACG GCTGTCGGTG AACGCCGCCG GGATCCACTT CGTCGGCGAC GACGCGCAGA CCCTGCACTA CGCGCTGCCA AGCGAGCCCG GCGACACGGT CTACCCGCGC GAAGGCGCCC CTTGGCCGCT GGTCTGGGAC ACCGCGGCCG ACGAGATACG TATCAGTGAT CCGATACGCG GCTACACATG GCACTTCCCG ACAGTGCATT ACAGCGAGGA CACCGGGCAG ATCCGCGACC TCATAGCCAT GAGCGACCGG AGCGGCAACC GTGTCGAGTA CATCCGTGAC GCCCTCGGGA CGCCGGTCGA GGTGCGGCAC TCGGGCGGCT ACCGAGTCGC TGTGGACCTC CGCGAGACGG CATCCGGGCA GCGCATCAGT GCCCTGAGGT TGGTTGGCGA TGACGCGGAA TCCGCTCTGC TCATCGGATT CGGCTACGAC GAACGCGGCC GCCTGAGCCG CGTCATGGAC CCCGAGGGCA ACTCCCTCCA GTACTCCTGG GACGAGCAGA ACCGGATCAC CGGCTGGCAG GACCGGCTCG GGATGGACTA CCACTACACC TACGACGAGC GCGGCCGCGT CGTCCACGGC CAGGGTAACC ACGGGTTCCT GACCGCGTCG TTCGACTACC ACGACGAAGA GCGCTTCACC CTCGTCACCG ACTCCGACGG GAACGTCACG CGCTACGGCT ACGACGAGCG CGGCCGGATC GTGGCGGTCA CCGACCCGGC CGGCAACGTC GAACTGCGCG AGCTGGACCG GTATGGGAAC CAGCTGTCGG TGGTCGACGA AATGGGACGC GCGACCACCT TCGAACGCGA CGGACTCGGG CAGGTTCTCC GCTCGGTCAT GGCCGACGGC GCGGAGACCA CGACGACGTG GGCCGCACCG GGACTGCCCG AGCAGATCAC GGACGCCATC GGAGCGGTAT GGCAGTACTC GTATGACGCG ATGGGCCGCC TGGCGACGGA GACCGACCCG TTGGGCGCCG TCACGTCCTA CGAGTACACC GCGAACGGAT ATCTGAGCCG GATGACCGAT CCGGCTGGGC ATGCGATCAC CGTCGAGTGC GACGCGGTCG GGTTGCCGGT GCGGGTAATG GACCCCGACG GTTCGGTCAC GACCACCACG CGCGACGCGG CAGGACGTAT CAGTACTTTG ACTGACGGCT CCGGTCGCGT CACGGAACAG CACTACGACT CGCGCGGCAA CCTGCTGACG CGCATCATGC CGGACGGCGC GACGTGGACC TTCAGCTACG ACCTCGAGAG CAACCTGAGC GGCGAGCAAG CGCCGGACGG CTCGGTGCGT ACGTGGCAGT ACACGTTCTT GAACACCTTG GTCGGACGCA CTGAGGCGGA CGGCGCGGCC TATCGCTTCG CGTACGACGG CCAGATGCGG CTGACGACGG TCACCGGACC GACCGGAGCC GCCTGGCGCT ACGAGTACAA CCCCGTCGGG CATCTCGTGG CTGAGACCGA CTTCAACGGC CGGCGCATCG ACTACGAGCG GGATGCCGTC GGTCAGATGA CCGTCCTGTC GCAGGCCGAG GGCCGGCGGC AGCAGTTCCT CCATGACCCC GTCGGCAGGG TGCTGGCGAT GGACGCGGAC GGCGACGTCA CCCGCTACAG CTTCGACGCT GCAGGGCGCA TGATCGCAGC CACGGCGCCG GGAACGGAAC TCAGCCGGAC GTACGACGCG GTGGGGCGGC TCGTCACGGA GACCGTGGAC GGGCACGCCG TGTCGTATCG CTACGACGCG GCGGGCCGTG CCGCCGGACT TCGGCTGTCG CAGGGGCACG AGGCATCGTG GGAGTTTTCG CCGGGCGGCG CGCTTACACG GCTCAGCTCG TCCGGTCACG AGATCGCGTT CACGACGGAC GCGGCCGGTC GTGCCACCGG CTGGGTGGCG GATCGCAAGC TGAGCATGAC GCGCGGATTC GATGCCGCGG GGCGCTTGGC CGCACAGCGG GTCACGTTCG GAACGTCGGC TCTGGTCGCG CGGGATTTCG CGTACTCGCC GACGGATCTG CTCTCTGAAA TCCGCGATGT GCGGACCGGC ACGCGTCGCT TCGAACTGAC CAAGGCCGGG CGGGTGGCTG GCGTCCAGGC CGAGGGTTGG CACGAGTCCT ACGCATATGA CGCCCTGGGC AATCTGGCGT CGACCAACAG CCAGAACAGC GAATCGGTTG TCTATGTCCA CGACGGCACG CTCATCAGCT CTGCCGGACG GACCGTCTAC CGGCACGATG CGATGGGCCG GGTGGTCTCG AAGACCCGCC GCCTGCTTTC CGGTGGCACG AAGACCTGGG ACTACCGCTG GGATGCGCGC AATCGGCTCG TGGCCGCGCG GACGCCCGAG AACGTCGTGT GGACGTATCA GTACGACCCG CTGGGTCGCC GCGTCGGCAA GGTCCGCCTG AACGGGGACG GCAGCGTGGC CGAGCAGATC CGCTTCACGT GGGACAAGAC CCGGCTGGCT GCCGTCACGG CGGCCGACGG CACGGTCACG ACCTGGGACT ATCTGCCCGA CACCTTCACG CCGATCGCTC AGCATACGCA CACGCCGGCG GCCGGGTCTG TGGATCCCGA CGTGGCTGTG ACGTACGACG TGGCTCCGGT GTCTGCGTCG GAGCCGGACT TCGCGCTTGT CGTGACCGAC CCCGTCGGCA CACCTACGGA GCTCGTCAGC GCTGACGGCC ATGTGGTGTG GCAACAACGG CGCGCGTCCA TCTGGGGATT GCCCGCGGAT ATCGTCCCGC CGGACGCGGA CGAATTCCCG CTGCGTTTCC CGGGGCAGTA TCACGACTCT GAGACCGGAC TGCACTACAA CCTCAACCGC TATTACGACC CGGAAGCGGC CGCGTACCTC ACGCCCGACC CACTGGGTCT GGAGCCGGCG CCGAACCAGT ACGGCTACGT CGGCAACCCG CTCGCCGACA GCGACCCGCT CGGCCTCTAC CCGGCCTCCG GCAACGCCCG GGGCGGCAAC GGCTCCAACG AGAACGTGAT GCCGAAGAGC CAGGCTGACG ACGTCGCCAA ATATCTCGGC TACAAGAAGA CCAAGGAAAT GTCGGCGGGC AAGCAGCCGA TCTGGGTGAA CAAGAAGGCC GGCGGCGGCC AGCCGAAGTA CATCACCTAC GACCGGACCG GCCACAGCGG CGGTATCTTC AAGGGCGCCA GCTTCGAGAA ACCGTTCCAG ACCACCAAGG ACACGGGTCG CGACGGCACC TACGATCTCG ACGTCGATGG GAGCGGGAAC GTGTCCGGTC TGAAATGGGT CGCGAAGTGA
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Protein sequence | MARPTGWDVL GLDGDPTPGV VESVQALAKA FGDFAHDAEA AYHSLNSFGS DATALQWVGQ TADAFKGQFG PLPGRLQKLY TSYSEASDAL SAYAPQLQAA QTKADTALRQ AQDANSNLQR ATSNANNAAT DLKTAQQSHA TTPNPQAVTD AQTAHDTAQT NLNNAKAHMA ALAKQANDAY NDRINAAKTC GSALHHAQSD GIHNKHWWEH VGEVLSEVGG EIADIANELA PFLDILALAT SWIPGVDVVT AALAEADNII AIAGTAMKIT GDAMQGHWGD ALMGAGMLGL QFVGGRMLGK LGGEAEGEGR NLLGSAEKDA EGDAASTAER GGQEVDGNAG ATTDGDPVDV VSGQMLTWDD DVVLPGVLPL ILRRAYASKY DTGRLFGPGW ASTLDQRLSV NAAGIHFVGD DAQTLHYALP SEPGDTVYPR EGAPWPLVWD TAADEIRISD PIRGYTWHFP TVHYSEDTGQ IRDLIAMSDR SGNRVEYIRD ALGTPVEVRH SGGYRVAVDL RETASGQRIS ALRLVGDDAE SALLIGFGYD ERGRLSRVMD PEGNSLQYSW DEQNRITGWQ DRLGMDYHYT YDERGRVVHG QGNHGFLTAS FDYHDEERFT LVTDSDGNVT RYGYDERGRI VAVTDPAGNV ELRELDRYGN QLSVVDEMGR ATTFERDGLG QVLRSVMADG AETTTTWAAP GLPEQITDAI GAVWQYSYDA MGRLATETDP LGAVTSYEYT ANGYLSRMTD PAGHAITVEC DAVGLPVRVM DPDGSVTTTT RDAAGRISTL TDGSGRVTEQ HYDSRGNLLT RIMPDGATWT FSYDLESNLS GEQAPDGSVR TWQYTFLNTL VGRTEADGAA YRFAYDGQMR LTTVTGPTGA AWRYEYNPVG HLVAETDFNG RRIDYERDAV GQMTVLSQAE GRRQQFLHDP VGRVLAMDAD GDVTRYSFDA AGRMIAATAP GTELSRTYDA VGRLVTETVD GHAVSYRYDA AGRAAGLRLS QGHEASWEFS PGGALTRLSS SGHEIAFTTD AAGRATGWVA DRKLSMTRGF DAAGRLAAQR VTFGTSALVA RDFAYSPTDL LSEIRDVRTG TRRFELTKAG RVAGVQAEGW HESYAYDALG NLASTNSQNS ESVVYVHDGT LISSAGRTVY RHDAMGRVVS KTRRLLSGGT KTWDYRWDAR NRLVAARTPE NVVWTYQYDP LGRRVGKVRL NGDGSVAEQI RFTWDKTRLA AVTAADGTVT TWDYLPDTFT PIAQHTHTPA AGSVDPDVAV TYDVAPVSAS EPDFALVVTD PVGTPTELVS ADGHVVWQQR RASIWGLPAD IVPPDADEFP LRFPGQYHDS ETGLHYNLNR YYDPEAAAYL TPDPLGLEPA PNQYGYVGNP LADSDPLGLY PASGNARGGN GSNENVMPKS QADDVAKYLG YKKTKEMSAG KQPIWVNKKA GGGQPKYITY DRTGHSGGIF KGASFEKPFQ TTKDTGRDGT YDLDVDGSGN VSGLKWVAK
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