Gene Caci_8192 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_8192 
Symbol 
ID8339571 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp9503197 
End bp9504102 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content75% 
IMG OID644961278 
ProductdTDP-4-dehydrorhamnose reductase 
Protein accessionYP_003118856 
Protein GI256397292 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1091] dTDP-4-dehydrorhamnose reductase 
TIGRFAM ID[TIGR01214] dTDP-4-dehydrorhamnose reductase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCCGGC CGATCGTGAT CGTTCCGGGG CGCGAGGCGC CGCGCCGGTG GCTGGTCACC 
GGCGCCGGCG GGATGCTCGG GACTGATCTC GTGGCGCTGC TGAAGGCCGA GCCGGCCGCG
CAGGTCACCG CGCTGACCCG GGCCGAGCTG GACGTCACCG ACGCCTCGGC GGTGGCCGCC
GCGGTCGCCG GGCACGACAT CGTGGTGAAC GCCGCGGCCT GGACCGACGT CGACGGCGCC
GAGACCCACG AGGCGCAGGC CACCGCGGTC AACGGCGGCG GTGTCAGCAG CCTGGCCTCG
GCGTGCGCGG CCACCGGCGC GCGCTTGCTG ACGGTGTCGA CCGACTACGT CTTCGACGGC
AAGGGCGAGG CGCCCTACGG CGAATACGCG GCGACCGACC CGATCAACGC CTACGGCCGC
TCGAAGCTGG TCGGCGAGCG GGCCGTGCTC GCGGTGCTGC CCGAGACCGG CTACGTGGTC
CGCACGGCGT GGCTCTACGG CGCGCACGGC CCGAACTTCG TCCGCACGAT GCTGCGGCTG
GCCGGCGAGC GGGAGACCCT GGACGTGGTC GACGACCAGA TCGGGCAGCC GACCTGGACC
GGCGCGCTGG CCGGGCAGCT GATCGCGCTG GCGCAGGCCT CCCAGGCGCC GGCCGGCATC
TACCACGGCA CCGCGTCCGG GCAGACCTCC TGGTTCGGGC TGGCGCGCGC GGCCTTCGAG
GAGGCCGGAC TGGACCCGGA GCGGGTCCGC CCGACGACCT CGGACAAGTT CGTGCGGCCC
GCCGAGCGCC CGAAGTACAG CGTGCTCGGG CACGATCGCT GGGCCGAGGC CGGACTCCCG
GAGCTCGGGG ACTGGCGCGG GATGCTCGCG GCCAGCGGTG TGGCGACCGC GGGGCAGGTC
GGCTGA
 
Protein sequence
MTRPIVIVPG REAPRRWLVT GAGGMLGTDL VALLKAEPAA QVTALTRAEL DVTDASAVAA 
AVAGHDIVVN AAAWTDVDGA ETHEAQATAV NGGGVSSLAS ACAATGARLL TVSTDYVFDG
KGEAPYGEYA ATDPINAYGR SKLVGERAVL AVLPETGYVV RTAWLYGAHG PNFVRTMLRL
AGERETLDVV DDQIGQPTWT GALAGQLIAL AQASQAPAGI YHGTASGQTS WFGLARAAFE
EAGLDPERVR PTTSDKFVRP AERPKYSVLG HDRWAEAGLP ELGDWRGMLA ASGVATAGQV
G