Gene Caci_7916 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_7916 
Symbol 
ID8339293 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp9188325 
End bp9189107 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content73% 
IMG OID644961000 
Product3-hydroxybutyrate dehydrogenase 
Protein accessionYP_003118580 
Protein GI256397016 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGCTG CTGTCACTTC TGTCGCCGCC CTGGACCTGT CCGGCCGCAC CGCGCTGGTC 
ACCGGTGCCG CCGGCGGCAT CGGGCTGGCC TGCGCCGAGC GGCTGGCCGC GGCCGGCGCC
AAGGTGGTCG TCGCCGACAT CAGCGCCGAC GGCGCGCACG CCGCCGCCGA GAAGGTCGGC
GGCGAGGCGC TGGTCGCCGA CCTGAGCGAC CTGGACCAGG CCTCGGCACT GCCGCACCGG
ATCGGCGGGG TGGACGTGCT GGTCAACAAT GCCGGCCTGC AGCACGTCGC GCCGCTCCAC
GAGTTCCCGG TCGACCGCTT CTCGCTGATC CTGCGGCTGA TGCTGGAGGC GCCGTTCCGC
CTGATCCGCG AGTCGCTGCC GCACATGTAC GAGCGCGGCT GGGGGCGGGT CGTGAACATC
TCCTCGGCGC ATGGGCTGCG CGCCTCGGAG TTCAAGGCCG CGTACGTGAC GGCCAAGCAC
GGCCTGGAAG GGCTGTCAAA GGTCGCGGCG CTGGAGGGCG CGCCGTACGG CGTCACCTCG
AACTGCGTGA ACCCGGCCTA CGTGCGCACG CCCCTGGTCG AGAACCAGAT CGCCGACCAG
GCCGCCGCGC ACGGCATCCC GCCGGAGGAG GTGGTGGCGA AGGTGATGCT GGAGCGCTCG
GCCGTCAAGC GCCTGATCGA GCCCGCCGAG GTGGCCGAGC TGGTGGCGTA TCTGTGCTCC
CCGGCCGCCG CCTCGGTCTC CGGCGCCTCG CTGGCCATGG ACGGCGGATG GACAGCACGG
TGA
 
Protein sequence
MDAAVTSVAA LDLSGRTALV TGAAGGIGLA CAERLAAAGA KVVVADISAD GAHAAAEKVG 
GEALVADLSD LDQASALPHR IGGVDVLVNN AGLQHVAPLH EFPVDRFSLI LRLMLEAPFR
LIRESLPHMY ERGWGRVVNI SSAHGLRASE FKAAYVTAKH GLEGLSKVAA LEGAPYGVTS
NCVNPAYVRT PLVENQIADQ AAAHGIPPEE VVAKVMLERS AVKRLIEPAE VAELVAYLCS
PAAASVSGAS LAMDGGWTAR