Gene Caci_7737 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_7737 
Symbol 
ID8339113 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp8975348 
End bp8976115 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content68% 
IMG OID644960821 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003118402 
Protein GI256396838 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02947] RNA polymerase sigma-70 factor, TIGR02947 family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTTGG CACTGAAGCA TCGGCGTCCG GCAGTCAAGA TCGATTTGTC GGGGGTCGAG 
CCTTGGATAA GCTCTTCGGG AAAGCCCGAG GAGGTGAGGA CGGTCGCCGT GACCGCTGAC
GACGCACGTG GCGAGGCCGT CATCGCCGAG GCTGTGTCCA CCGACGCCCC GCGCGTGGAT
CCCGGGGAGT CCGAGGACGC GCGCAACGAG CGCTTCGAGC GCGACGCCCT CGTCTACCTG
GACCAGCTCT ACCCGGCCGC GCTGCGGATG ACCCGCAACC CGGCCGACGC CGAGGACCTG
ATCCAGGAGA CCTTCGCCAA GGCGTTCGCC TCCTTCCACC AGTTCCGCGA GGGCACCAAC
CTCAAGGCCT GGCTGTACCG GATCCTCACC AACACGTTCA TCAACAGCTA CCGCAAGAAG
CAGCGCGAGC CCCAGGTCAG CCCGACCGAG GAGATCGAGG ACTGGCAGCT GGCCCGGGCC
GAGTCGCACA GCTCGGCGGG TCTGCCCTCG GCCGAGACGG TGGCGCTGGA CCACCTGCCG
GACTCCGACG TCAAGGAAGC CCTGCAGGCC ATCGGCGAGG AGTTCCGCAT CGCGGTCTAC
CTGGCCGACG TCGAAGGCTT CGCCTACAAG GAGATCGCCG ACATCATGGG CACGCCCATC
GGCACCGTGA TGTCCCGGTT GCACCGCGGG CGCCGGCAAC TCCGTGCGAT GCTTGAGGAC
TACGCGCGGG AGCGCGGCCT GGTGGCCGCC GCGTCGGAAG GGAACTGA
 
Protein sequence
MTLALKHRRP AVKIDLSGVE PWISSSGKPE EVRTVAVTAD DARGEAVIAE AVSTDAPRVD 
PGESEDARNE RFERDALVYL DQLYPAALRM TRNPADAEDL IQETFAKAFA SFHQFREGTN
LKAWLYRILT NTFINSYRKK QREPQVSPTE EIEDWQLARA ESHSSAGLPS AETVALDHLP
DSDVKEALQA IGEEFRIAVY LADVEGFAYK EIADIMGTPI GTVMSRLHRG RRQLRAMLED
YARERGLVAA ASEGN