Gene Caci_7716 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_7716 
Symbol 
ID8339092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp8953517 
End bp8954035 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content74% 
IMG OID644960800 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003118381 
Protein GI256396817 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02983] RNA polymerase sigma-70 factor, sigma-E family 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGACAG CGAGATCGGA GGCGGACTTC GAGGCGTTCT ACAGCGCCTC GTCGCGCCGC 
CTGCTCGGCC ACGTGTACGC GATGGTCGGC GATGTGGCCG AGGCCGAGGA CGCGCTCCAG
GAGGCCTATG CGCGGGCCTG GCAGCGGTGG GGCCGGGTCG CAGGCTACGA GGACCCTGAA
GCCTGGGTCC GCACCGTCGC CTACCGCATC GCGGTCAGCT CCTGGCGCCG GACGGCCAAC
CGGCTGCGCG CGCACCGGCG CGGCGCCCGG GCCGAGGAGG AGCCGGGCGC CTCGCCGGAC
CGGCTGGCGC TGATCGCCGC GCTGCGCGCG ATCCCCGCCG AGCAGCGGCG GGTGATCGTG
CTGCACCACC TGGTGGGGCT GAGCGTCGAG GAGGTCGCCC AAGAGACCGG CGCCCCGATC
GGGACGGTCA AGTCGCGCCT GGCCCGGGGC CGCCGCGCGC TCGCCGGCCA CGTCTCCGAG
TTCGCCGATG AGAATCAGGA GGCCGAGAAC TATGTCTGA
 
Protein sequence
MGTARSEADF EAFYSASSRR LLGHVYAMVG DVAEAEDALQ EAYARAWQRW GRVAGYEDPE 
AWVRTVAYRI AVSSWRRTAN RLRAHRRGAR AEEEPGASPD RLALIAALRA IPAEQRRVIV
LHHLVGLSVE EVAQETGAPI GTVKSRLARG RRALAGHVSE FADENQEAEN YV