Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_7708 |
Symbol | |
ID | 8339084 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 8944452 |
End bp | 8945513 |
Gene Length | 1062 bp |
Protein Length | 353 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644960792 |
Product | RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily |
Protein accession | YP_003118373 |
Protein GI | 256396809 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02980] RNA polymerase sigma-70 factor, sigma-B/F/G subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.851755 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGCGCCT TCGAGCCGGA CGAGATCCCA GCCGCCCGCC GGGCCGGGTA CGGCGAGGGG CAGCGGGGAA CGCCCGCGGC CGCCGCCGGG GACGAGGACA CGCCGGACGC TCCGGACGCC CCGGACGAGC CCGACACCGA GGCCGAGGAC GGCGACTTCG ACGAGCCCAG CCTGGAGATC GACGAGCTCG GCGTGGTCTT GGAGCACGAC GAGCCGGACA CCGAGACCGA CGGCGAGACC GCCGCCCCGG CCGCGACGAC CTCCTTCCCC CTGCGCCGCC CGCCGCGCCA GGGCGGCCCG CACGCCGAGG CGCACGCCCG CGCCCGCGAA CTGTTCGCCC GCCTGAACGA GCTCCCCGAG GGCTCCACCG AGCGCAAGCA GATCCGCGAC GAGCTGGTCC AGATGCACCT GCCCCTGGTG GAGCACCTGG CCCGGCGCTT CCGCAACCGC GGCGAGCCGC TGGACGACCT GACCCAGGTG GCGACCATCG GCCTGATCAA GTCCGTCGAC CGCTTCGACA CCGAGCGCGG CGTGGAGTTC TCCACCTACG CCACACCGAC CGTCATCGGC GAGATCAAGC GCCACTTCCG CGACAAGGGC TGGGCGGTCC GCGTCCCCCG CCGCCTCCAG GAGCTCCGGC TGTCGCTGAC CAGCGCCACC TCCGAGCTCT CGCAGCGCAA CCGCCGCTCC CCCACCGTCG CCGAACTGGC CGAGTACCTC AAGATCTCCG AAGAAGAGGT CCTGGAAGGC CTGGAATCGG CGAACGCCTA CTCCACCCTG TCCCTGGACG TCTCCGAAGG CGGCGACGAG GACTCGCCGG CCGTCGCGGA CTCCCTCGGC AGCGAGGACG AGGCACTCGA GGGCGTGGAG TACCGGGAGT CGCTCAAGCC GCTCCTGGAG CAGCTGCCGC CGCGCGAGAA GAAGATCCTG CTGCTTCGCT TCTTCGGCAA CATGACGCAG TCGCAGATCG CCGAGGAGAT CGGCATCTCG CAGATGCACG TCTCCCGCCT GCTGGCGCGG ACCCTGGAGC AGCTGCGGGC GCAGCTGCTC GTGGACGAGT GA
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Protein sequence | MRAFEPDEIP AARRAGYGEG QRGTPAAAAG DEDTPDAPDA PDEPDTEAED GDFDEPSLEI DELGVVLEHD EPDTETDGET AAPAATTSFP LRRPPRQGGP HAEAHARARE LFARLNELPE GSTERKQIRD ELVQMHLPLV EHLARRFRNR GEPLDDLTQV ATIGLIKSVD RFDTERGVEF STYATPTVIG EIKRHFRDKG WAVRVPRRLQ ELRLSLTSAT SELSQRNRRS PTVAELAEYL KISEEEVLEG LESANAYSTL SLDVSEGGDE DSPAVADSLG SEDEALEGVE YRESLKPLLE QLPPREKKIL LLRFFGNMTQ SQIAEEIGIS QMHVSRLLAR TLEQLRAQLL VDE
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