Gene Caci_6529 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6529 
Symbol 
ID8337893 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp7526131 
End bp7526805 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content69% 
IMG OID644959625 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_003117218 
Protein GI256395654 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.270807 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.114568 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGGCG TAAGCGTGCT GCTGGCCGAC GACCAGCCCC TCTCGCGCCA CGGCCTCGCC 
ATGATCCTCC AAGCCCAGGG AGACATCGAG GTCGTCGGTC AGGCGGCGGA CGGCGTCGAA
GCCGTAGAGC TGGCCGCCGC CCTCCAGCCC GCGATCGTGC TGATGGACGT GCGCATGCCC
CGGCTCGACG GCATCGCGGC CACCCGGCAG ATCATCGCTC GAGCGCTGCC CACGAGGGTC
ATCGTGCTCA CGACCTTCGA CCTCGACGAT TACGCCTTCG AGGCCCTGCG CGCCGGCGCG
AGCGGCTTCC TGTTGAAGAA CTCCAGGCCC GACGACCTCG CCGCCGCCAT CCGGGCGGTG
GCCGCGGGAG ACGCCGTGAT CGCCCCGTCC ACCACCAGGC GCCTGCTCGA CGCCTACGCC
GACCGGTTCA CCGCGCCGTC GGACCCTCCC GCCGGAGCAT CAGACCCCTC CGCGCCGCTT
GAGAGCCTGA CCCGCAGAGA GCGCGAGGTC TTCGATCAGA TGGTGTCCGG GCTGACCAAC
AAGGAGATCG CGCAGCAGTT GGCCCTCTCG GAGACCACCG TCAAGACCCA CGTCGTGCGC
ATCCTGGCCA AACTCGCCGT ACGAGACCGG GTCCAGGCCG TCATCTACGC CTACGAGACC
GGATACATCC ACTGA
 
Protein sequence
MTGVSVLLAD DQPLSRHGLA MILQAQGDIE VVGQAADGVE AVELAAALQP AIVLMDVRMP 
RLDGIAATRQ IIARALPTRV IVLTTFDLDD YAFEALRAGA SGFLLKNSRP DDLAAAIRAV
AAGDAVIAPS TTRRLLDAYA DRFTAPSDPP AGASDPSAPL ESLTRREREV FDQMVSGLTN
KEIAQQLALS ETTVKTHVVR ILAKLAVRDR VQAVIYAYET GYIH