Gene Caci_6348 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6348 
Symbol 
ID8337711 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp7296711 
End bp7297913 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content74% 
IMG OID644959449 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003117043 
Protein GI256395479 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00107036 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00103053 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGACCGCGC TCTACCGAGC CGCCTACCAC CACGGCGACG CCCGCGCCGC GCTCACCCAG 
GCCGCCTTCG ACCTGGCGCG CGGCGGCGGG CCGCCCCGAG TGACCCTGCG AGCCGCCGCC
CGCGAGATCG GCATCACGGC GGCCGCGGTC TACCGGCACT TCGCCACCGT CGAGGAACTC
CTCGAGGCGG TGAAGGGCCG GGCTTCGCGC GTGCTGGCCG ACCAGCTGGA CGAGGCACTG
GCGGCGGTCG GGGGCGATCC CGACCGGCGG GGCGAGCACG AGCGCGAGCA CGAGCAGCAG
AACGAGTACG AGCACGACCA CGACCACGCG CCCGACCACG ACCACGAGCC CGACCGTCAC
AGCGAGCACG ACCGCCGACA CGACCACGAC TCCGACCCCT GGCTCGACCA CGCGCCCGAC
TGCCACAGCG AGCACCAGCT CGACCCCGAC CCCGACCCCG ATCCCGACCA CGACAGCGAT
CCCGACCACC GGCTTGACCC CGATCCCGAC CGCCGCGGCG ATCCGGACCG CCAGCTTGAC
CCCGATCCCG ACCACCACGG CGAGCCCGAC CGCCAGCTCG ACCCCGACCT CGGCCACCAC
AGCGATCCCG ACCGCCGGCT CGACCACCAC AGCGATCCCG ACCGCCGGCT CGACCACCAC
AGCGACCCCG ACCCCGACCA CCACGGCGAG CCCGACCGCC GGCTCGACCC CGACCCCCAC
CCCGACCCCG ACCCCCACCC CGACCCCCAC CCCGACCCCG ACCCCCACCC CGACCCCGAC
CGATACCGCG AGCGCGATCA CGAGCACGAG CGTGATCGCC CCCGCGGTAT CGGCCATCAC
CGCGATCCCG ATCCGTGTCG GGACCGCGGC CTTACCGCAT CCGCCATCGG CGCGGGCGCC
GGCGAACCAG CCGTCCGCTC CCGTGCCCCG ACCCGCACCC CGTCCCCCGA CCCCACTCGG
ATCCGCGCTA TCGCAGAGGC CTACCTCTGC TTCGCGCGCG AGCACCCCGG TCTGTTCGGC
ATGGCTTGCC ACGGCGGCGT CGACGCCGTC CGTGAGCTGG TCGCCGAGCG GGTCGGGGAT
GTTCCGCGCC CGACCGCTCT GGCCGTGTGG TCCGCCGCTC ACGGTGTGGC CGTGCTCAGC
GTGCCGGAGG CCGACCAACA GCAAGTGCTG GACATCGTTC TCGCCGGAAT CGTCTCGATC
TAG
 
Protein sequence
MTALYRAAYH HGDARAALTQ AAFDLARGGG PPRVTLRAAA REIGITAAAV YRHFATVEEL 
LEAVKGRASR VLADQLDEAL AAVGGDPDRR GEHEREHEQQ NEYEHDHDHA PDHDHEPDRH
SEHDRRHDHD SDPWLDHAPD CHSEHQLDPD PDPDPDHDSD PDHRLDPDPD RRGDPDRQLD
PDPDHHGEPD RQLDPDLGHH SDPDRRLDHH SDPDRRLDHH SDPDPDHHGE PDRRLDPDPH
PDPDPHPDPH PDPDPHPDPD RYRERDHEHE RDRPRGIGHH RDPDPCRDRG LTASAIGAGA
GEPAVRSRAP TRTPSPDPTR IRAIAEAYLC FAREHPGLFG MACHGGVDAV RELVAERVGD
VPRPTALAVW SAAHGVAVLS VPEADQQQVL DIVLAGIVSI