Gene Caci_6265 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6265 
Symbol 
ID8337628 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp7206909 
End bp7207598 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content70% 
IMG OID644959366 
Productpolysaccharide deacetylase 
Protein accessionYP_003116960 
Protein GI256395396 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.249412 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATCATCG GATTTTCCCG CAAAGTCGGG GCACTTCTCG TCGCGGCCGT CTTGGCGCTG 
CTCGCGATCG GATTCTCCGC GGCACCGGCC GCCGCGTCGA GCAAGGCGGC GGCCGGCAAA
GCTGTGACAA GCAAGGTCGT GTACATCACC TTCGACGACG GGCCCAGTCC CGTCTACACG
CCGAAGGTCC TCAAGGTGCT GGCGCAGTAC GGCGTGCACG CCACGTTCTT CGAGGTCGGC
CAGAACGTGG CCGCGCACCC GTCGGTGACC ACGCGGGTGT ACCGCGCGGG CAACAGCGTG
CAGAACCACT CCTGGTCCCA CCCCGACCTG CGCAAGCTGT CGGCATCGCA GTTCGCGTAC
CAGGTCAACG CCACCGACCG GCAGATCCGC GCGCACACCG GCTACCGTCC CTGCTGCCTG
CGCCCGCCGT ACGGCGCGGT CAACGGCGCG GTGCGCTCCC GGACGGCGGC ACTCGGCAAG
AAGATCGCAC TGTGGACGGT CGACCCGCGC GACTGGTCGC GGCCCGGCGC CTCGGCGATC
CAGGCGCGCG TGCTCAGCCA CGTACGACCG GGCTCGGTAG TGCTGCTGCA CGACGGCGGC
GGCGACCGCA GCCAGACCGT CGCGGCACTG AGCGGCATTC TCAGGACCCT GAAGGCGCGG
GGCTACACGT TCGCGACGTG GGCTCGGTAA
 
Protein sequence
MIIGFSRKVG ALLVAAVLAL LAIGFSAAPA AASSKAAAGK AVTSKVVYIT FDDGPSPVYT 
PKVLKVLAQY GVHATFFEVG QNVAAHPSVT TRVYRAGNSV QNHSWSHPDL RKLSASQFAY
QVNATDRQIR AHTGYRPCCL RPPYGAVNGA VRSRTAALGK KIALWTVDPR DWSRPGASAI
QARVLSHVRP GSVVLLHDGG GDRSQTVAAL SGILRTLKAR GYTFATWAR