Gene Caci_5856 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5856 
Symbol 
ID8337217 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp6763103 
End bp6764455 
Gene Length1353 bp 
Protein Length450 aa 
Translation table11 
GC content70% 
IMG OID644958960 
Productextracellular solute-binding protein family 1 
Protein accessionYP_003116555 
Protein GI256394991 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2182] Maltose-binding periplasmic proteins/domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.399636 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGAGAT ACCGTCCCTC CTTGACGACC GCCGCTGCCG CGGTCGTAGC GGCAGCTCTT 
TCCCTGACCG GCTGCTCCAG CTCCACCTCG AAGTCCGCTT CGGGGTCGGG CGCCTCGGCG
ACGTCGGCGT CCTCGCCCTC GGCGTCCGGG TCCAGCTCGG CGCCGGCCGC GGCCTCGTCC
TCCTCCAGCG CGCCGCCGGT CCGCGACCCC AACACAGACC TGGTGATCTG GACCGACGCC
CAGCGCGCCC CGGTCCTGCA GCAGTTCGCG CAGAGCTTCG CCGCCGCCAA CGGCATCTCG
GTGAGCGTCC AGCCGGTGGC CACCGACCTG CAGTCGGCGT ACGTCACCGC CACCGCCGCC
GGCAAGGGAC CGGACATCGT GGTCGGCGCC ACCGACTGGA TCGGCAACCT GGTGCAGAAC
GGCGCCATCT CGCCGCTGCC GCTGACCGCG GCGCAGAAGG GCTCCTTCCA GACCACCGCG
CTGAACGCCG TCACCTACAA CGGCCAGGTC TACGGCGTTC CCTACGCGAC CGAGAACCTC
GCGCTGATCA CCAACACCGC CGAGGCCGCG GCGAACCCGG CGACCTTCGA GACCATGGTC
GCCGACGGCC AGGCCGCGGT GAAGGCCGGC AAGGCCTCCG AGGCGTTGGC GATGCAGATC
GGCCAGCAGG GCGACCCCTA CACGGCGCAG CCGCTGCTGG GCTCGGCCGG CGGCTTCATC
TTCGGGACCA AGGCCGACGG CAGCTACGAC CCCTCGCAAG TCGGTGTCGA CAACGCCGGC
TCCAAGGCGT TCGCCGCGCA GCTGGCCAAG TACGGCGAGA AGGGCCAGAA CGTCTTCAAG
CGCAGCATCG ACGCCAACAA CGCGGTGTCG CTGTTCACCT CCGGCAAGAC CCCGTACCTC
ATCTCCGGTC CGTGGGCGCT GGACCAGATC CGCAAGGCGA ATCTGAAGTA CTCGATCAGC
GCGGTCCCCG GCTTCGCCGG CATGGGCCCG TCGCAGCCGT TCGTCGGCGT GCAGGCCTTC
TACGTCTCGG CCAAGGCCAA GAACACCGCG ATCGCGCAGG AGTTCACGCT GAACTACCTG
ACGAAGAAGG ACGTCGAGGA AGCGCTGTAC AAGGTGGACC CGCGCGCGCC CGCCCTGACC
GACGCCTACA ACGATGTGTC CAAGACCGAC CCGGACATCG CCGCCTTCCA GGCCGCGGCC
GCGCACGGCG TCGTGCTCCC GCAGATCCCC GCGATGTCCG CGGTGTGGGG TCCGCTCGGG
ATCGCCGAGG CGGCGATCGT CGGCGGCGCC GACCCGAACA CCTCGATGGC GGACGCCGCC
ACCCAGATCA AGGCCGCTAT CGCCAAGGGC TAG
 
Protein sequence
MVRYRPSLTT AAAAVVAAAL SLTGCSSSTS KSASGSGASA TSASSPSASG SSSAPAAASS 
SSSAPPVRDP NTDLVIWTDA QRAPVLQQFA QSFAAANGIS VSVQPVATDL QSAYVTATAA
GKGPDIVVGA TDWIGNLVQN GAISPLPLTA AQKGSFQTTA LNAVTYNGQV YGVPYATENL
ALITNTAEAA ANPATFETMV ADGQAAVKAG KASEALAMQI GQQGDPYTAQ PLLGSAGGFI
FGTKADGSYD PSQVGVDNAG SKAFAAQLAK YGEKGQNVFK RSIDANNAVS LFTSGKTPYL
ISGPWALDQI RKANLKYSIS AVPGFAGMGP SQPFVGVQAF YVSAKAKNTA IAQEFTLNYL
TKKDVEEALY KVDPRAPALT DAYNDVSKTD PDIAAFQAAA AHGVVLPQIP AMSAVWGPLG
IAEAAIVGGA DPNTSMADAA TQIKAAIAKG