Gene Caci_5507 details

Gene Information

• Locus tag: Caci_5507
• ID: 8336867
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Catenulispora acidiphila DSM 44928
• Kingdom: Bacteria
• Replicon accession: NC_013131
• Strand: +
• Start bp: 6353970
• End bp: 6357452
• Gene Length: 3483 bp
• Protein Length: 1160 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644958611
• Product: hypothetical protein
• Protein accession: YP_003116207
• Protein GI: 256394643
• COG category: [S] Function unknown
• COG ID: [COG4717] Uncharacterized conserved protein

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.00070285
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: 12
• Fosmid unclonability p-value: 0.00245225
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAGGCTGG ATCGCCTGGA TCTGGTGAAG TACGGACGGT TCACCGACCA CGTCCTCGAC 
TTCTCCGCTC CGGGAGTACA CCTGGTCGTC GGCCCGAACG AGGCCGGCAA GTCGACGATG 
CGCAACGCCG TCACCGATCT CCTGTACGGC ATACCGGCTC GCACGACTTA CGGCTATCTG 
CATGGCATGC AGGATCTGCG GATCGGCGCT TTGCTCCGCG CCGGTGACGG CAGCGAGCTC 
GAGATCGTGC GCCTGAAGAA GATCAAAGAT CCTCTGCGTA CCGTCGGCGA CGAGGTTCTC 
GACCCCCGGG AACTTCAGTC GATCCTGGCC GGTGTGACGA AGGACGACTT CACCGATGTG 
TTCGCGATCG ACCACGAGGA GCTGCGCACC GGCGGAGCCG CGCTGCTCGC GGGCAAGGGC 
GATCTGGCCA AGGCGTTGTT TGAGAGCCGG TCGAGCGCTC AGCTGACGAC GTTGCTGGCT 
CGTCTGAGGG AGGAGCACAG CCAGCTATAC GTACCGCGTG GCAGGATTCC CGTCCTCAAC 
GCCGCCATCG GCCCCGACGG GTCCCTGTCG CAAGCGCGCC GGGAGCTGGA CGAACAGATC 
CTGCGGCCTG AAACCTACCG GGAGTCAGAA CGCGCCGTCG ATGATGCGAC GAAGCAGTAC 
GAGGGGATCA GCGAGGATCT GAAGCGGGCC CGTACCGAAC AGTCGCGGCT GACCCGCATC 
AGACAGGCCT ACGCGGGGAT GGAGCAGCGC AGGCAGTTGC TAGAGGAGCG CGCTCAGCTG 
CTGGCTGCGG GACCGCTGGT CGCGGGGGAC GTCGGCTATC GGTACGACAC GTTGCGCTCG 
GAGCGGAAAG AGGCCGAGAC CATACTCCAA GGCTTCGTAG ACGATGTTCG GGAGGTCGAG 
GACGAGCTCC GCGAACAGAG TCCGGACCTC GCAGTGCTGG CAGTGGCCGA AACGATTGCG 
GTGCTTCATG CAGATGCCAA TGGGGTCGAG AAGGCGGAGA AGGCAGGGCT GAAGGCAGCG 
CGTTCAGCCG ACGAACTGCG CGGCCAGGCA TCATCGAGGC TTGCAAAGCT GCGGGCCGGC 
GTCAGCGGTG ATTCAGAGGT CGAGACAGTA GCGCCGACCT TGCGTGCGCG GGTAGGCGAG 
CTGATGAACG AGCAGACGGT CCTGGCGACC GAACTGGGTG CCGCGCGTAA GCAGGTGAAG 
AGCAGGGGCC GGGCCCTGGA CGCGGAGTTG GCAAAGCTTC CGGCGGACGC CAAACTGGTC 
GATCGTGCGC CACTGGCGGC CGTCGTCAAG GCCGTACCCT CATCTTTGTC GGGCCAGATC 
CTGGCCTTGG AGAAGCAGTA CACGGCCGCA CAAGCGAAAC TTGCGAAGGC ACGCAAGCGC 
AATGCGCGGT TCGCCCTGCC CGAAGATGTC GGCGATCTGA CGGTACCCAG CGTCGAGGAG 
ATCGCAGCGT ACAGGAAGCG CATCGACGAC ACTGACAAGG CTGTGGCCCG CTGTGGAGAG 
CGAGTAGCGC TTCGCACCAC CGAGCTCACC GGGCACCGCC GCGATCTAGA AAACTTCCTA 
CGCCAGGATC CGCCTCCAAG CGAGACAGAT CTCGCGGCCA GTCGTGCACA CAGGCAGGAG 
CTCTGGGGAC AACTACACTC CGGGCTCGTC GATCCTCCGT CGGCGAGTAC TGCTCCGCTG 
CCAGTCAGCG AATACGAGAC GGCTGTGGCA GCCAGTGATG AGACCGTCGA CCGGATGCGC 
CGCGACGCTC AGCGGATGGC CGAGCGCTCG CAGCTCGAAG AGGCGGTCGA AAAGACCGAA 
CACCTTCTCT CCGAGGTGCA GAAGGAACAC GAGGTCGCGG TCGAGGACAG ACAGGCCCTT 
GAGACGGGAT GGAACGAGCT CTGGACTCCC AGCGATCTAC CCGCTCCCGC AGTCGAAGCG 
GCTACCGATC TACTCGCAGC CTTACAGATA CTGCGCGAGC AGATCGATGA ACGTGACGCC 
CTGCTTCTAA CTCTCGACTC TGATCGTGCC GCTGCCAACG CCCATGCGAC GCGCTTGCGT 
GAGGCGCTTG CGGACGCTGG CTTTGCCGTC CCTCCGGAGT CAGCGTCCCT CGACGAACTG 
ATCGAAGCAG CCAGCGCCTT TCATGCGACT CTCGCCGAGA CGGCAAAGAA GCGGTCCAGG 
ATCACCGCGG CCGCAGAGAA CCTCCGCAAC GAACTCACCG ACGCGCAGTC AGAGGTCACG 
AGGCTGGAAA CCGAACTCGC GGACTGGGAC GAGAAATGGA AGCGGCTGCT CGCCGACAAC 
CAGCTCACCG GCACCCCAGC CCAGGTGGCC GCGTCTCTCA GCGAGCTCGA CGAGATAGCT 
CGCCTCCACG CAGACGCACT TCGCTTCCAG GAGCAGGCCG ACGAAGCCGA CATCCAAGTC 
TCTGCATTCA CTTCAAGACT CGACCAAGCC CTCGCAGACG CCGGCCAGCC GCCCCTCACC 
ACACCAGACC GCCGATACGC CGTGGTGCGA AGCCTCAAGG ATTACCTCGA CCGCCAGAGC 
GCGTCGCAGG ACCAGATCAC CCGGCTGACG GATCGGCTCG CCACGCTGCG CGGCAAGCTG 
GAAAGCGCGC GGAACAACCG TGCCGAGGCG GACCAGAACG TCGCCGCGGT GCTCGCTGAG 
GACTCGATGC ACCATGAGCA TGAGCTAGTG GAAGCGATCG AACGCACGGA CGCGATCCGG 
GACCTCGATA AGCAGCTCAA AGCCGTTGAG AACTCCCTCG CAGGGGCCGG CGTCGGCATC 
GCTCAACTCG AGCAGGAAGT ATCAGACCAC GATCCCGACG AGCTCACGGC TCTCATCGCC 
GATCTCGATG CGCGGATCCT TCAGCTGGAA GGCGATCTCG GCACGAGGGC TGCCGAACTC 
GCGCGTTGTA AGAACACATT GGAACAGATG AACGGCTCCG ACGCCGCGGC GATCGCAGCA 
GATGCCGTGG AAGAGCAGCG CTCTGGCATC GTGCACCACG CCCACGACTA CCTGCGACTG 
CGCCTCGCCG AGCAGATCCT CCTAAAAAGC ATCGAGACCT ACCGCCAAGA GAATCAGGCC 
CCAGTCCTGC GCAGAGCCCA GCACATCTTC GCCCGGATCA CTCACGACGA GTATCCCGAA 
CTGGTCGACG ACACTGACGT GGACGGCAAG GCCGTGCTAC GAGCCCGTCG CGGGTCCGGA 
CCGCTCGTAG ACGTGGAGGA CATGAGCGAG GGCACGCGCG ACCAGCTCTA CTTGGCGCTG 
CGCCTAGCGT CACTCGACCG CTACGCCGAC GAAGGCCGCG CCATGCCGCT ACTGCTGGAC 
GACGTGTTGA TGACGTTCGA CGATGGACGC ACCGGCGCCG GTCTGAGCCT GCTCGATGAG 
ATGGCGGACC GGTTTCAGGT CATCGTGTTC ACCCATCATG AACACATCGG CCGGATCGCC 
CAGGACGCGC TGGCAGCAGG GCGGATTCAT GTCCACGACC TCATCCCGGC TTCCGAATGC 
TGA 

 

Protein sequence

MRLDRLDLVK YGRFTDHVLD FSAPGVHLVV GPNEAGKSTM RNAVTDLLYG IPARTTYGYL 
HGMQDLRIGA LLRAGDGSEL EIVRLKKIKD PLRTVGDEVL DPRELQSILA GVTKDDFTDV 
FAIDHEELRT GGAALLAGKG DLAKALFESR SSAQLTTLLA RLREEHSQLY VPRGRIPVLN 
AAIGPDGSLS QARRELDEQI LRPETYRESE RAVDDATKQY EGISEDLKRA RTEQSRLTRI 
RQAYAGMEQR RQLLEERAQL LAAGPLVAGD VGYRYDTLRS ERKEAETILQ GFVDDVREVE 
DELREQSPDL AVLAVAETIA VLHADANGVE KAEKAGLKAA RSADELRGQA SSRLAKLRAG 
VSGDSEVETV APTLRARVGE LMNEQTVLAT ELGAARKQVK SRGRALDAEL AKLPADAKLV 
DRAPLAAVVK AVPSSLSGQI LALEKQYTAA QAKLAKARKR NARFALPEDV GDLTVPSVEE 
IAAYRKRIDD TDKAVARCGE RVALRTTELT GHRRDLENFL RQDPPPSETD LAASRAHRQE 
LWGQLHSGLV DPPSASTAPL PVSEYETAVA ASDETVDRMR RDAQRMAERS QLEEAVEKTE 
HLLSEVQKEH EVAVEDRQAL ETGWNELWTP SDLPAPAVEA ATDLLAALQI LREQIDERDA 
LLLTLDSDRA AANAHATRLR EALADAGFAV PPESASLDEL IEAASAFHAT LAETAKKRSR 
ITAAAENLRN ELTDAQSEVT RLETELADWD EKWKRLLADN QLTGTPAQVA ASLSELDEIA 
RLHADALRFQ EQADEADIQV SAFTSRLDQA LADAGQPPLT TPDRRYAVVR SLKDYLDRQS 
ASQDQITRLT DRLATLRGKL ESARNNRAEA DQNVAAVLAE DSMHHEHELV EAIERTDAIR 
DLDKQLKAVE NSLAGAGVGI AQLEQEVSDH DPDELTALIA DLDARILQLE GDLGTRAAEL 
ARCKNTLEQM NGSDAAAIAA DAVEEQRSGI VHHAHDYLRL RLAEQILLKS IETYRQENQA 
PVLRRAQHIF ARITHDEYPE LVDDTDVDGK AVLRARRGSG PLVDVEDMSE GTRDQLYLAL 
RLASLDRYAD EGRAMPLLLD DVLMTFDDGR TGAGLSLLDE MADRFQVIVF THHEHIGRIA 
QDALAAGRIH VHDLIPASEC