Gene Caci_5489 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5489 
Symbol 
ID8336849 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp6329438 
End bp6330661 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content76% 
IMG OID644958593 
Productalanine racemase domain protein 
Protein accessionYP_003116189 
Protein GI256394625 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3616] Predicted amino acid aldolase or racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.525884 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGCCT CCCCGCCCGG ACCCGCAGCG GACCGCCGCC GCCTCGACAC CGCGACCGCC 
GCCTTCGAGC CGCCGTTCGC CGCCGTCGAC CTCGACGCGT TCCACGCCAA CGCCCAGGAC
CTGACCCGGC GCGCCGCGGG CAAGGCGATC CGCGTGGCCA GCAAGTCGGT GCGCTGCCGG
GCGCTGCTGG AGGAAGTGCT GAGCCTGCCG GGCTACCAGG GCATCCTGGG CTTCACGCTG
CCGGAGGCGC TGTGGCTGGC GGCGGAGGGC TTCGACGACA TCGTCGTGGC CTACCCCTCG
GCCGACCGCG CCGCCTACGC CGAGCTGGCC GCCGACGCCA CCGCGCTGGC CGCCGTCACG
GTCATGATCG ACAGCACCGA CCACCTGGAC CTGATCGAGA AGGCGGTGGC CGGCACGCCC
GGCGGGCAGT CCGCGCCGAT CCGGGTCTGC ATCGACATCG ACGCCGCCTT CCACACCGCC
GCCGGCCGGA TCCGCATCGG CGCGCGCCGC TCCCCGCTGC ACACTCCGGC GCAGGTCGCG
GCGATGGCCC GGGAGGTGCT GCGGCGCGAG CAGTTCAAGC TGGTCGGGCT GATGGCCTAC
GAGTCGCAGA TCGCCGGCGT CGGCGACGCG CCCCCCGGAC GCCCGCTGCG CGGCGCGGCG
ATCCGCGCGA TGCAGAGCCG CTCGGCGCGC GAGCTGGCGG CCCGGCGCGG CGCGATCGTC
GCGGCGGTCC GCGAGCTGGC GCCGCTGGAG TTCGTCAACG GCGGCGGCAC CGGCAGCATC
GAGCGCACCA CCGCCGAGGA GGCGGTCACC GAGATCGCCG CCGGCTCCGG CCTTTACCAG
CCCTGGCTGT TCGACTCCTA CCGCTCCTTC CGCGGCCGCC CCGCGGCGCT GTTCGCGCTG
CCGGTGGTGC GCCGCCCGGG ACCTGAGACC GCGACCGCGC TCGGCGGCGG CTACCCGGCC
TCCGGCGCGG CGGGCAAGGA TCGGCTCCCG CAGCCCTACC TGCCGCCGGG GCTGTCCTAC
GACCCGAACG AGGCCGCCGG CGAGGTCCAG ACGCCGCTGC TGGGCAAGGT CGCGGCGAGC
CTGCGCGTCG GCGACCGGGT GTGGTTCCGG CACACCAAGG CCGGCGAGCT GTGCGAGCGC
TTCGACACGC TGCACCTGAT CTCGGGCGAC GAGGTGATCC GCTCCGTCCC GACGTACCGC
GGCGAGGGTA AGACCTTCCT GTGA
 
Protein sequence
MPASPPGPAA DRRRLDTATA AFEPPFAAVD LDAFHANAQD LTRRAAGKAI RVASKSVRCR 
ALLEEVLSLP GYQGILGFTL PEALWLAAEG FDDIVVAYPS ADRAAYAELA ADATALAAVT
VMIDSTDHLD LIEKAVAGTP GGQSAPIRVC IDIDAAFHTA AGRIRIGARR SPLHTPAQVA
AMAREVLRRE QFKLVGLMAY ESQIAGVGDA PPGRPLRGAA IRAMQSRSAR ELAARRGAIV
AAVRELAPLE FVNGGGTGSI ERTTAEEAVT EIAAGSGLYQ PWLFDSYRSF RGRPAALFAL
PVVRRPGPET ATALGGGYPA SGAAGKDRLP QPYLPPGLSY DPNEAAGEVQ TPLLGKVAAS
LRVGDRVWFR HTKAGELCER FDTLHLISGD EVIRSVPTYR GEGKTFL