Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5480 |
Symbol | |
ID | 8336838 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 6321363 |
End bp | 6322181 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 644958582 |
Product | tRNA/rRNA methyltransferase (SpoU) |
Protein accession | YP_003116180 |
Protein GI | 256394616 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0566] rRNA methylases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.666691 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCGAGG CGAGTCCTGA GCTGTCCAAC CCGCGCGCAC CCCGCGCGGT GGCGGCCCGG CGGCTCGCCT CGCGGCCGTT CCGGGCCAAG CAGCGGCTGT TCCTGGCCGA GGGCCCGCAG GCGGTGCGCG AGGCGGCGGA CCTCGACGGC GTGCTCGTCG AGCTGTTCGC CACCGGCGAG GCCGCCGAGC GGTACGGCGA GATCCTCGCC GCCGCCGGCA AACAGGGCTC GAAGATCACG ATCGCGACCC CGGAGCTGCT GGCTTCGTTG AGCGAGACGG TGACGCCGCA GGGTCTGATC GGCGTGTGCC GCTTCCTCGA CGTCCCTTTG GAGTCCTTCC TGGCCGCGCG CGCCCCCAAG CTGGTCGCGC TGCTGGCCCA TGTCCGCGAC CCCGGAAACG CCGGAACGGT CATCCGCTGC GCGGACGCCG CGGGCGCGGA TCTGGTGATC GTCACCTCCG AGTCGGTCGA CGTCTACAAC CCCAAGGCGG TGCGCGCCTC GGCCGGCAGC CTGTTCCACG TGCCGGTGGC CGTCGGCGTC AGCGCGCAGG AGGCCGTTGA CATGCTGCGC GCGGCCGAGC TGCGGGTCCT GGCCGCCGAC GGCGGCGGCG CGGCCGACCT CGACGACGAA CTCGACGCCG GCCGGCTGGC GGCGCCCACA TGCTGGATGT TCGGCAACGA GGCCTGGGGA CTGCCCGAAG CGCTGCTGGC GCTGGCCGAC GAGGCGGTCC GGGTGCCGAT CCACGGCCGC GCCGAGAGCC TCAACCTGGC GACGGCGGCA GCAGTGTGCT TATATTCCTC TGCCCGGGCG CAACGCTGA
|
Protein sequence | MSEASPELSN PRAPRAVAAR RLASRPFRAK QRLFLAEGPQ AVREAADLDG VLVELFATGE AAERYGEILA AAGKQGSKIT IATPELLASL SETVTPQGLI GVCRFLDVPL ESFLAARAPK LVALLAHVRD PGNAGTVIRC ADAAGADLVI VTSESVDVYN PKAVRASAGS LFHVPVAVGV SAQEAVDMLR AAELRVLAAD GGGAADLDDE LDAGRLAAPT CWMFGNEAWG LPEALLALAD EAVRVPIHGR AESLNLATAA AVCLYSSARA QR
|
| |