Gene Caci_5373 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5373 
Symbol 
ID8336727 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand+ 
Start bp6195490 
End bp6196515 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content72% 
IMG OID644958471 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_003116073 
Protein GI256394509 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.296897 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACACAGA CAGTTCAGGA CGGCGCCTTG GAGAACGAGG CGCCGGGCCA CGACGTGCTG 
CGGTTGGAAG GCCTGCACGT CTCCTACAAG ACGGCGGCCG GACCGGTGCC GGCGGTGCGG 
GGCGTGGACC TCGCGCTGCC CGCCGGCGGG CGCCTCGGCC TGGCCGGGGA GTCCGGCTGC 
GGCAAGTCCA CGCTGGCCGG GGCGGTGTTG CGGCTGCTGC CGAAATCGGC GCGGGTGACC 
GGCAGGATCC TGCTGGACGG CGAGGACGTG CAGACCATGA CCTGGGGTCG GCTGCGCGCC 
GTGCGCTGGG CGCAGGCCTC GATCGTGTTC CAGGGCGCGA TGCACTCGCT GAACCCGGTG 
CGGCGCGTCG GGGACCAGAT CGCCGAGCCG ATCCTGTTGC ACGACAAGAA GGTCAGCCGC 
GCCGCCGCCG ACCGGCGGGT CGCGACACTG CTGGATCAGG TGGGACTGGT CGCGGCGCGC 
GCCGCGGCGT ATCCGCACGA GCTGTCCGGC GGGCAGCGGC AGCGGGTGAT GATCGCGATG 
GCGCTGGCCT GCTCGCCGCG GCTGATCGTG GCCGACGAGC CGACCACGGC GCTGGACGTG 
ATGATCCAGG CGCAGATCCT GCGGCTGATC GGGGAACTGG TCAGCGAGCA CGGGATCAGC 
CTGCTGATGA TCAGCCACGA TCTGGCGGTG CTGGCAGAGC ACTGCGATCG GCTGGCGGTG 
ATGTATGCCG GGCGCATCGT CGAGGAGGGT CCGGCCGACC GCGTGTTCGC TGACGCGCGC 
CATCCCTATG GCCGCGCGCT GGCCGATGCG TTCCCGCGTA TCGGCGATGC TGCTTCGCGG 
CGCGGGCCGC GCGGGCTGCC GGGCGATCCG CCGGATCCGG CGCATCTGCC GGAGGGCTGC 
ACGTTCGCGC CGCGCTGTCC GATCACCGCC GAGGAGTGCT TGACGGCGGA GCCGCCGCTG 
ATCGCTGCCG GGGATGGACG GACGGCGGCG TGTGTGCGGA TGGATGTTCT GCGGGAGGGA 
TCGTGA
 
Protein sequence
MTQTVQDGAL ENEAPGHDVL RLEGLHVSYK TAAGPVPAVR GVDLALPAGG RLGLAGESGC 
GKSTLAGAVL RLLPKSARVT GRILLDGEDV QTMTWGRLRA VRWAQASIVF QGAMHSLNPV 
RRVGDQIAEP ILLHDKKVSR AAADRRVATL LDQVGLVAAR AAAYPHELSG GQRQRVMIAM 
ALACSPRLIV ADEPTTALDV MIQAQILRLI GELVSEHGIS LLMISHDLAV LAEHCDRLAV 
MYAGRIVEEG PADRVFADAR HPYGRALADA FPRIGDAASR RGPRGLPGDP PDPAHLPEGC 
TFAPRCPITA EECLTAEPPL IAAGDGRTAA CVRMDVLREG S