Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5363 |
Symbol | |
ID | 8336717 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 6181563 |
End bp | 6185072 |
Gene Length | 3510 bp |
Protein Length | 1169 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644958461 |
Product | methionine synthase |
Protein accession | YP_003116063 |
Protein GI | 256394499 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.816675 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCTCGA CCGCCGCCCC TTCCGCGCAC GCCGGAAACG CCCGGATCGC CGCACTCCGC GAAGCACTCC GGACCAGGGT GGTGGTCGCC GACGGAGCCA TGGGCACCAT GCTGCAGGCG CAGAATCCCA CGCTGGACGA CTTCCAGGGC CACGAGGGCT GCAACGAGAT CCTGAACATC TCCCGCCCCG ACATCGTGCA GACCGTCCAC GAGGAGTACT TCCGCGCCGG CGTGGACTGC GTGGAGACCA ACACCTTCGG CGCGAACCAC ACCAACCTCG GCGACTACGA CATCTCCGAC CGCGTCTTCG AGCTCTCCGA AGCCGGCGCC CGGCTGGCCC GCGAGGTCGC CGACGGCTTC GCCACCGCCG ACAAGCCGCG CTGGGTGATC GGCTCCATCG GTCCGGGGAC CAAGCTGCCG TCGCTGGGCC AGATCGGCTA CGCCACCCTG CGCGACGCCT ACCAGGCCGA GGCCGCCGGG CTGATCGCCG GCGGCGCGGA CGCCCTGCTG GTGGAGACCA GCCAGGACCT GCTGCAGATC AAGGCCTCGG TGCTGGGGGC GAAGGCCGCG GCGCGCGCCG CCGGGATCGA CGTCCCGGTC TGGGCCTCGG CGGCGTTCGA GACCACCGGC ACGATGCTGC TGGGCACCGA GGTCGGCGCG GCGCTGACCG CGCTGGAGTC CCTGGGCATC GAGCGCATCG GACTGAACTG CTCCACCGGC CCGGCCGAGA TGAGCGAGCA CCTGCGCTAC CTGGCCAAGC ACTCCACCAT CGGGCTCTCC TGCATGCCCA ACGCCGGACT TCCGGTGCTG ACCTCCGACG GCGCGCACTA TCCGCTGAGC CCGGAGGAGC TCGTGGACTG GCACGCGCGG TTCGTCGACC AGTTCGGCAT CGCGCTCATC GGCGGCTGCT GCGGCACCAC CCCGGAGCAC CTGCGGCAGT TGGTGGAGAG CCTCGGCGGC CGGGAGGTGC CGCAGCGCGA TCCCAAGCGC GAGCCCGGGG CGTCCTCGCT GTATCAGCAC GTGCCGTTCC GGCAGGACAT CAGCTATCTG GCGATCGGCG AGCGCGCGAA CACCAACGGC TCCAAGGCGT TCCGCGAGGC GCTGCTGGCC GAGAACTGGG ACGCGTGCGT GGAGATCGCC CGCAACCAGA TCCGCGACGG CGCGCACATG CTCGACCTGT GCGTGGACTA CGTCGGCCGC GACGGCGTCC GGGACATGCA GCAGGTCGCC AGCCGCTTCG CGACCGCCTC CACGCTGCCG ATCGTGCTGG ACTCCACCGA GCCGCAGGTG CTGCAGGCCG GGCTGGAGAC GCTCGGCGGG CGCGCCGTGA TCAACTCGGT GAACTACGAG GACGGCGACG GACCGACCTC GCGCTTCGCC CGCATCATGG AGCTGGTGTC CGCGCACGGC GCCGGCGTCA TCGCCCTGAC CATCGACGAG CAGGGCCAGG CGCGCACCGC CGAGCACAAG GTGGCGATCG CCGAGCGGCT GATCGAGGAC ATCACCGGCA ACTGGGGCGT CCCGGAGGAC TCGATCCTCG TGGACTGTCT GACCTTCACC ATCTGTACCG GGCAGGAGGA GTCGCGCCGC GACGGCCTGG AGACCATCGA GGGCATCCGG GAGCTGAAGC GCCGGCACCC GGACGTGCAG ACCACGCTGG GCCTGTCGAA CATCTCCTTC GGCCTGAACC CCGCCGCGCG CCAGGTCCTG AACTCGGTGT TCCTGCACGA GTGCGTCGAG GCCGGACTGG ACTCGGCGAT CGTCCACGCC TCCAAGATCC TGCCGATCGC CCGCATCCCG GAGGAGCAGC GCAAGACCGC CCTGGACCTG GTCTACGACC GCCGCGCCGA GGGCTACGAC CCGCTGACCC GGCTGCTGGA GCTGTTCGAG GGCGTGGACG CGGCCTCCCT GAAGGCCTCG CGCGCCGACG AGCTGGCCGC GCTGCCGCTG AACGAGCGCC TCAAGCGCCG CATCATCGAC GGCGAGCGCA AGGGTCTGGA GGCCGACCTG GACGAGGCGC TCGGCGAGCG TCCGGCGCTG GAGATCGTCA ACGAGGTGCT GCTGGACGGC ATGAAGACGG TCGGCGAGCT GTTCGGCTCC GGGGAGATGC AGCTGCCGTT CGTGCTGCAG AGCGCGGAGA CCATGAAGAC CGCGGTGGCG CACCTGGAGC CGCACATGGA GAAGTCGGAC TCCACCGGCA AGGGCACGAT CGTGCTCGCC ACGGTGAAGG GCGACGTCCA CGACATCGGC AAGAACCTGG TCGACATCAT CTTGTCGAAC AACGGCTACA ACGTGGTCAA CCTCGGCATC AAGCAGCCGC TGCAGACCAT CCTGGACGCC GCCGAGGAGC ACGCCGCCGA CGCCATCGGG ATGTCCGGGC TGCTGGTGAA GTCCACGGTG GTGATGAAGG AGAACCTCGA GGAGATGAAC ACCCGCGGGG TGGCGGACCG CTGGCCGGTG CTGCTCGGCG GCGCCGCGCT CACCCGCGCC TACGTCGAGC AGGATCTCGC CGAGCTGTAC GACGGCGAGG TCCGCTACGC CCGCGACGCG TTCGAGGGAC TGAACCTGAT GGACGCGGTC GCGGCGGTGA AGGCCGGCGT GCCGGGGGCG TCCCTGCCCG CGCTGCGTCC GCGCCGGGTG AAGGCCTCCG GGCCGCTGCG CGAGATCCCG GACGAGCCGA TCCCGGCGCG CTCCGACGTC GCGCTGGACA ACCCGATCCC CGCGCCGCCG TTCTGGGGCG ACCGCATGGT GAAGGGCATC CGGCTGGCGG AGTACGCGCC CTACCTCGAC GAGCGCGCGC TGTTCCTCGG ACAGTGGGGA CTCAAGCCCG GGCGCGGCTC GGGCGGGCGT TCCTATGAGG AACTAGTCGA GACCGAGGGA CGCCCGCGCC TGCGGATGTG GCTGGAGCGT CTGCAGACTG AGAACCTGCT GGACGCGGCG GTGGTCTACG GCTACTTCCC GGCGGTGAGC AAGGGCGACA GCCTGCTGAT CCTGGACGAG AGCGGGGAGC AGCGGACCAG CTTCACGTTC CCGCGTCAGC GGCGTGACCG TCACCTGTGC CTGTCGGACT TCTGGCGTCC GCAGGAGAGC GGGGAAGTGG ACGTCGCGCC GTTCCAGCTG GTGACGGTCG GCGCGCGGAT CGCCGAGGCG ACCGGGGAGC TGTTCGCCGC GAACTCCTAC CGCGAATACA TGGAGCTGCA CGGCTTGTCG GTGCAGCTGG CCGAGGCGCT GGCTGAGTAC TGGCACGCGC GGGTCCGCGA CGAGCTCGGC TACGCCGCGG AGGACCCGGA GTCCACGGAG GGTCTGTTCA AGGTGGAGTA CCGGGGATGC CGGTACTCCT TCGGATATCC CGCGTGCCCG GACCTGGAGG ACCGGACGAA GATCGTGGAG CTGCTGAAGC CGGAGCGGAT CAACGTGCAG CTGTCGGAGG AGTACCAGCT GCACCCGGAG CAGTCGACGG ACGCGATCGT CGCGCACCAC CCGGAGGCTT CGTACTTCAA CGCGGGGTGA
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Protein sequence | MASTAAPSAH AGNARIAALR EALRTRVVVA DGAMGTMLQA QNPTLDDFQG HEGCNEILNI SRPDIVQTVH EEYFRAGVDC VETNTFGANH TNLGDYDISD RVFELSEAGA RLAREVADGF ATADKPRWVI GSIGPGTKLP SLGQIGYATL RDAYQAEAAG LIAGGADALL VETSQDLLQI KASVLGAKAA ARAAGIDVPV WASAAFETTG TMLLGTEVGA ALTALESLGI ERIGLNCSTG PAEMSEHLRY LAKHSTIGLS CMPNAGLPVL TSDGAHYPLS PEELVDWHAR FVDQFGIALI GGCCGTTPEH LRQLVESLGG REVPQRDPKR EPGASSLYQH VPFRQDISYL AIGERANTNG SKAFREALLA ENWDACVEIA RNQIRDGAHM LDLCVDYVGR DGVRDMQQVA SRFATASTLP IVLDSTEPQV LQAGLETLGG RAVINSVNYE DGDGPTSRFA RIMELVSAHG AGVIALTIDE QGQARTAEHK VAIAERLIED ITGNWGVPED SILVDCLTFT ICTGQEESRR DGLETIEGIR ELKRRHPDVQ TTLGLSNISF GLNPAARQVL NSVFLHECVE AGLDSAIVHA SKILPIARIP EEQRKTALDL VYDRRAEGYD PLTRLLELFE GVDAASLKAS RADELAALPL NERLKRRIID GERKGLEADL DEALGERPAL EIVNEVLLDG MKTVGELFGS GEMQLPFVLQ SAETMKTAVA HLEPHMEKSD STGKGTIVLA TVKGDVHDIG KNLVDIILSN NGYNVVNLGI KQPLQTILDA AEEHAADAIG MSGLLVKSTV VMKENLEEMN TRGVADRWPV LLGGAALTRA YVEQDLAELY DGEVRYARDA FEGLNLMDAV AAVKAGVPGA SLPALRPRRV KASGPLREIP DEPIPARSDV ALDNPIPAPP FWGDRMVKGI RLAEYAPYLD ERALFLGQWG LKPGRGSGGR SYEELVETEG RPRLRMWLER LQTENLLDAA VVYGYFPAVS KGDSLLILDE SGEQRTSFTF PRQRRDRHLC LSDFWRPQES GEVDVAPFQL VTVGARIAEA TGELFAANSY REYMELHGLS VQLAEALAEY WHARVRDELG YAAEDPESTE GLFKVEYRGC RYSFGYPACP DLEDRTKIVE LLKPERINVQ LSEEYQLHPE QSTDAIVAHH PEASYFNAG
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