Gene Caci_5341 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5341 
Symbol 
ID8336695 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand- 
Start bp6156503 
End bp6157117 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content73% 
IMG OID644958439 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003116041 
Protein GI256394477 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.087744 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.833644 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGTAC AGGCGCGCGA GCGGTTGTTG ACGGCGTCCG AAGAGCTGTT CTATGCCGAG 
GGAATCCGCG CGGTGGGCGT GGAGCGGATC CTGACGGCCT CGGGAGTGGG GCGCGCCTCG 
TTCTACCGGC ACTTCGCCGG CAAGGACGAA CTGGTGGTCG CCGTCCTGAC CCGCACCGAC 
GAACGCTGGC GCGAATGGCT GCGCGAAACC GTCACCGGAT ACGGACTGCC GCCCGCCGAA 
CGCCCGATCG CGGTGTTCGA CGCCCTGGGG GAGTGGCTCG ACGGCGCGGG CCACCGCGGC 
TGCGCCTTCA TCAACGCCAT GGTCGAGGCC GCCGACCGCA CCAGCCCGAT CCACGAAGCC 
GCCGCCGCGC ACAAGGAAGC GGTGACCGAC TACCTCGCCC GCCTCCTGGC CGAAGCAGGC 
CGCGACGACC ACGAAACCCT CGCCCCGGAA CTGATGCTCC TCATCGAGGG CGCCCTGGTC 
ACCTCCCAGC GCGAGGGCAC CTCGGAGGCG GCGATCCGCG CCGGCCGCAT CGCCCGCGTG 
CTGCTCGCGC GCCAGCCGGA CCCGCGCGAC GCGGTGCGGC GGCGGCTGCG GGTGGTGACC 
GGCGGGATGC GATAA
 
Protein sequence
MAVQARERLL TASEELFYAE GIRAVGVERI LTASGVGRAS FYRHFAGKDE LVVAVLTRTD 
ERWREWLRET VTGYGLPPAE RPIAVFDALG EWLDGAGHRG CAFINAMVEA ADRTSPIHEA 
AAAHKEAVTD YLARLLAEAG RDDHETLAPE LMLLIEGALV TSQREGTSEA AIRAGRIARV 
LLARQPDPRD AVRRRLRVVT GGMR