Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_4949 |
Symbol | |
ID | 8336303 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 5651214 |
End bp | 5651981 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644958048 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_003115650 |
Protein GI | 256394086 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | [TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.220607 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACATCGA ACCGATTCGA CCTGACCGGG CGCCTGGCCG TGGTCACCGG AGCACGCCGC GGCATCGGCC GGGCCATGGC CCGCGCGCTG GCCGAGGCGG GAGCCGACAT CATCGGCGTG AGCGCGCATC TGGAGGGCGC CGGCAGCGAC GTGGAGAAGG ACGTGACCGC CGCCGGACGT GCCTTCGAAG CGGTCCAGGC CGACTTCTCC GACCCCGCCG CCGTCGCGGC GCTCGCCGCG GACCTGGCCG GACGCGAACG CCCGGTGGAC ATCCTGGTCA ACAACGCCGG CACCATCGCC CGCACTCCCG CCGCCCGGCA CTCCGACGCC GACTGGGCTC TGGTTCTGCA GGTGAACCTC TCGGCGCAGT TCGTCCTCAC CCGCGCGGTG GGGGAGCGGA TGGTCGAACG CGGCCGGGGC AAGATCGTCT TCACCGCCTC CCTGCTCAGC TTCCAGGGCG GTATCACCGT GCCCGGATAC ACCGCCGCCA AGCACGGCAT CGCCGGTCTG ACCAAAGCCC TGGCCAACGA GTGGGCTCCG CACGGCGTCA ACGTAAACGC CATCGCGCCG GGCTACATCG CCACGGACAA CACCCAGGCG CTGCGGGACG ACGCGGAGCG CAGCGCGGCG ATCCTCTCGC GCATCCCGGC CGGCCGCTGG GGAGACGCGG ACGACCTCGC CGGCGCGACC GTCTTCCTCG CCTCGGACGC CGCCGCCTAC GTGCACGGCG CGATCCTGCC GGTCGACGGC GGCTGGCTGG GCCGATGA
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Protein sequence | MTSNRFDLTG RLAVVTGARR GIGRAMARAL AEAGADIIGV SAHLEGAGSD VEKDVTAAGR AFEAVQADFS DPAAVAALAA DLAGRERPVD ILVNNAGTIA RTPAARHSDA DWALVLQVNL SAQFVLTRAV GERMVERGRG KIVFTASLLS FQGGITVPGY TAAKHGIAGL TKALANEWAP HGVNVNAIAP GYIATDNTQA LRDDAERSAA ILSRIPAGRW GDADDLAGAT VFLASDAAAY VHGAILPVDG GWLGR
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