| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4874 |
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| Symbol | |
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| ID | 8336228 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 5543842 |
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| End bp | 5546991 |
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| Gene Length | 3150 bp |
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| Protein Length | 1049 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644957973 |
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| Product | Ricin B lectin |
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| Protein accession | YP_003115575 |
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| Protein GI | 256394011 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.524665 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.633916 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGCGC GCGGCATCAG GTCGCGGACG GCACTGTGGC TCTCCGCTCT GGTCGCCGTC
TCAGCGGCCG CATACGGGAC GCAGGCCGCT GCGACGCCGA GTGTCGCGCG TGCGGCCGTG
CAGACCACCT TGTACGCCTC CCCCACTGGG TCGGGATCTT CCTGCTCCCA GACCTCGCCG
TGCGCGCTGG CCGAGGCGCG CAGCGTCGTC GAGGGCATGA ACGGCTCGAT GACCGGCGAC
ATCGTGGTGT ACCTGACGGG CGGCACCTAC AGGCTCACCA GCACCTTCGC TCTGGGACCG
CAGGACTCCG GGACCAACGG GCACACCGTG TACTGGGAGG CTCTTCCGGG CCAGACACCG
GTCTTCGACG GAGCGCAGCA GGTGACCGGG TGGTCGCAGT ACAACTCGGG CCTGAACATC
TGGCGCGCGC CGGTGGCGGC GGGTACGCGG GCCGGGGACC TGTGGGTGGA CGGCGCGCGG
GCCTCGGTGA CCAAGAGCGC GATCAACCCC GGCGGGTTCT CCCAGTCGGG CGCGTCGTTC
ACGACCTCCG ACGGCTCGTA TCGCTCGTGG ATCGATCCCA CCGAGGCGGA GATCGTCGAT
GACAACCCGT GGCGGCAGCT GCACTGCCCG CTGGCCGGCA TCACCGCCAA CGGCGGCGGC
TCCAGCCTGA ACGTGAACCA GGCCTGCTAC AACGCCACGT TGAGCAACAC CGGCTTCCCG
TTCAACGGCG CGGGCTACCC GACGCTGAAC CACATCACCT GGATCGAGAA CGCCTACGCG
TTGCTGAACC AGCCGGGACA GTGGTTCCTC GACAGCGCCG GCGGCAGCCT GTACTACATC
CCGCTGCCGG GACAAAACAT GTCCACCGCC GACGTCGAAC TGCCCGTGGT CCAGGATCTG
GTCGACGTGC AGGGCACCCC GGGACACCTG ACCCCGATCA ACGACACGGC GTCAGGGATC
GCCTATTCCG GATCCGGCTG GGGCTCCTCG ACCGGCCGCG GGCTCGGCGA CTTCCAGAAC
GACGTGCACT CCACCCAGAC CAACGGCGAC TCGGTCAGCT ACACCTTCAC CGGCAGCGGC
ATCACCGCGC TGACGGAGCT GAACAGCGAC GAAGGCAGCA TCGGGGTCTA CATCGACGGC
ACGCTCAACC AGACCGTCAG CGCCGCCACC TCGGGCCAGC GAACCGCCGA GGACGCGGTG
GTGGCCGTCA GCGGACTGAC GCCCGGCAGC CACACGATCA AGCTGGTCAA ACAGAGCGGG
ACCTGGATGC TGCTCGACGG CTTCGTGGTG ATCCCGACCG CCGTCCAGCC GGCCCACGAC
ATCACCTTCT CCGGGATCAC CTTCCAGCAC AACACCTGGC TCACCGAGCT CTCCCAGGGC
TACCCGGAGA ACCAGACCGG CGTCATGTGG AGCGAGACCA ACCCGTGGAA TCAGGTCAAG
GACCCCGGGA TGATCAACGT CGAGCGCGGC AACCACATCA CCTTCGCCGG CGACACCATC
GCGCACACCG GCGACGCCGG CGTCGACTTC GGCAACGGGA CCCAGAACTC CACGCTCAGC
ACCAGCAGGA TCCTGGACAC CGCCGTCAAC GCCGTGCAGG TCGGCGAGGT CGACGACTAC
TACCTGACCG ACACGGCGCT GATGACCTCC GGGGACACCG TCACCGGCAA CTTCATCGAA
CACAGCGGTG TGGTCTTCGA AAGCACCAGC GGCATCCTGG TCGGCTACAC CCGCAATGTG
ACCGTCTCCC ACAACGACGT CGGCTACTCG GCCGCGCAGG GCATCTCCGT GGGCTGGGGC
TGGGGCTACG CCTCGCCCTA CTGCTCCGGT TGCGCCCACG GCTATGACTA CGCCGGGGGG
AACCAGGTCT CGTACAACTA CGTCTACGAC AACGGCCTGG GCGACGGAGC CGGCAACACG
GTGATGGCCG AATGCATCTA CACCCTGGGC GGCCAGGGCG ACGGCAACGG CTCGGTGTGG
TCGACCCTGA CCGGCAACGT GTGCCAGGAC CAGTACATCT ACAGCAACTG GGGCACCATC
GCCCACGACG AAGGCAGCTC CTACTGGCAG GACCGCGACA ACGTCGTGCG CTGGTCGGGC
CAGGACTGGA TGTACTACGA CCAGCCCACC GTCAACAACA TCACGGTCGG TCCCACGAAC
TACTCCGACA ACGCCGGCTA CCGGGCCGTC GTCCCGAACA ACACCAGCTT CACCCAGGCG
GCCATCGTTC CCGACGGCCA GTGGCCCGCC GGCGCGCAGG CCGTCATCAC CGCCGCCGGA
CCGCCCGCGC AGGTCGCGCC CCTCACCGGA ACCCTGGACG ACACCTGCCT GTGCCTGAAC
TACACCGGGT CCTCCTGGAC GTGGAGCGGC GACCGCAGAC TCGGCGACTT GGACAACGGA
ATACACCAAG CCACCGGCAA CGGTGACAGC TTCTCCGTGC AGTTCACCGG CACCGGCGTC
TCCTGGATCG GGGAGAAGAG CGGCAGCGAG GGCACGGCGG AGATCTACGT CGACGGTGCC
GACAAGGGTT CGGTCAACGC CAACAGTTCC CCCACGCAAG CCCAGCAGAC GCTCTACAGT
GTCGCCGGGC TGGCCGGCGG CACCCACACC CTCAAGGTCG TCAAGACCGG CGGCACCTAT
CTCCAGGTCG ACGCCGTCAA CATCACCGGG ACGGCCGTCG TCACCGGCGG CTCGGGCGGT
ACCGGCGGGG GCACGGGCAC CTATCCGACC GGCTACCACG CCCTGACCAT CGCCAGCAAT
AACCTGTGCC TGGACAACTA TGGCGCTGGT TCCACCGCCG GCGCGATCAT CGACCAGTGG
TCGTGCAACA GCGGGACCAA CCAGCAGTTC CAGTTCGTCC CCACCTCCGG CGGATACGGC
CAGCTCCAGA TCGAGAACTC CGGCCAGGAC GTCACAGTGT CCGGCGGCTC GGCCTCCCAA
GGGGTGGCGG GCATCGTGCA GCAACCGGTC AGCACGTCGA CCGCCGCCCA ATGGCTGCCC
CAGCAGCAGT CCGACGGCTC CTGGCAGTTC AAGAACCTGA ACAGCGGCCT TTGCCTGGAC
GTGTACGGAG CGAGCAGCAG CCAAGGCCAG CAACTCGACC AGTGGCCGTG CAAGAACGCA
CCGGGGACCA ATCAGGACTT CAAGCCCTGA
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| Protein sequence | MKARGIRSRT ALWLSALVAV SAAAYGTQAA ATPSVARAAV QTTLYASPTG SGSSCSQTSP
CALAEARSVV EGMNGSMTGD IVVYLTGGTY RLTSTFALGP QDSGTNGHTV YWEALPGQTP
VFDGAQQVTG WSQYNSGLNI WRAPVAAGTR AGDLWVDGAR ASVTKSAINP GGFSQSGASF
TTSDGSYRSW IDPTEAEIVD DNPWRQLHCP LAGITANGGG SSLNVNQACY NATLSNTGFP
FNGAGYPTLN HITWIENAYA LLNQPGQWFL DSAGGSLYYI PLPGQNMSTA DVELPVVQDL
VDVQGTPGHL TPINDTASGI AYSGSGWGSS TGRGLGDFQN DVHSTQTNGD SVSYTFTGSG
ITALTELNSD EGSIGVYIDG TLNQTVSAAT SGQRTAEDAV VAVSGLTPGS HTIKLVKQSG
TWMLLDGFVV IPTAVQPAHD ITFSGITFQH NTWLTELSQG YPENQTGVMW SETNPWNQVK
DPGMINVERG NHITFAGDTI AHTGDAGVDF GNGTQNSTLS TSRILDTAVN AVQVGEVDDY
YLTDTALMTS GDTVTGNFIE HSGVVFESTS GILVGYTRNV TVSHNDVGYS AAQGISVGWG
WGYASPYCSG CAHGYDYAGG NQVSYNYVYD NGLGDGAGNT VMAECIYTLG GQGDGNGSVW
STLTGNVCQD QYIYSNWGTI AHDEGSSYWQ DRDNVVRWSG QDWMYYDQPT VNNITVGPTN
YSDNAGYRAV VPNNTSFTQA AIVPDGQWPA GAQAVITAAG PPAQVAPLTG TLDDTCLCLN
YTGSSWTWSG DRRLGDLDNG IHQATGNGDS FSVQFTGTGV SWIGEKSGSE GTAEIYVDGA
DKGSVNANSS PTQAQQTLYS VAGLAGGTHT LKVVKTGGTY LQVDAVNITG TAVVTGGSGG
TGGGTGTYPT GYHALTIASN NLCLDNYGAG STAGAIIDQW SCNSGTNQQF QFVPTSGGYG
QLQIENSGQD VTVSGGSASQ GVAGIVQQPV STSTAAQWLP QQQSDGSWQF KNLNSGLCLD
VYGASSSQGQ QLDQWPCKNA PGTNQDFKP
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