Gene Caci_4660 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4660 
Symbol 
ID8336014 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5306155 
End bp5306940 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content71% 
IMG OID644957760 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003115362 
Protein GI256393798 
COG category[R] General function prediction only 
COG ID[COG4221] Short-chain alcohol dehydrogenase of unknown specificity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.268545 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCACGA ACACCGTGAA CACCATTTCA GGCCCGCTGA CCGGTCGCGT CGCCGTCATC 
ACCGGAGCCT CCAGCGGCAT CGGCGAGGCC ACCGCGCTGG AGCTGGCCGC ACTCGGGGCG
CGCGTGGTCG TACTGGCCCG CCGTGCCGAA CGGCTCGCAG ACCTGGTCGC CCGCATCGAA
AAAGATGGCG GCACGGCGCT GGCCATCGCC GCCGACGTCA CCGACCCGGC CGGGCTGCAG
GCCGCCGCGG CGCGGGTTCA GCGCGAGTTC GGCGGCGCGG ACCTGGTGAT GAACAACGCC
GGGGTGATGC TGCCGGCGCC GGTCGAGGAG CTGGCCACCG ACCAGTGGCA GCACCAGATC
GACCTGAACA TCAGCGGTGT GATGAACGTG ATCGCCGCGT TCACCCCGCA GCTGGTGGCC
TCCGCCGCCC AGCGGGGCGT GGCGGACCTG ATCAACACCT CCTCGATCGC GGCACAGAAC
ATCTTCCCCG GCTTCGCCGT CTACTGCGGC ACCAAGGCCT ACGTCACGCA CCTGTCGCGG
CAGCTGCGCG CGGAGTTGGG CGCCAAGAAG GTGCGGGTCG CGGCGATCGA GCCGGGCATC
GTCGGCACGG AGCTCCAGTC CCACGTCACC GACGCCGGCG CCCTGCAGTG GCTGGCCGGG
GCGAAGGAGG CGATGGAATT CCTGACACCG GCCGACGTCG CCCAGACCGT CGGCTTCCTG
GCCGCTCTGC CGCCGCGGGT CAACCTGCAG CAGGTCACGA TCATGCCGAC AGGCCAGCCG
AGCTGA
 
Protein sequence
MSTNTVNTIS GPLTGRVAVI TGASSGIGEA TALELAALGA RVVVLARRAE RLADLVARIE 
KDGGTALAIA ADVTDPAGLQ AAAARVQREF GGADLVMNNA GVMLPAPVEE LATDQWQHQI
DLNISGVMNV IAAFTPQLVA SAAQRGVADL INTSSIAAQN IFPGFAVYCG TKAYVTHLSR
QLRAELGAKK VRVAAIEPGI VGTELQSHVT DAGALQWLAG AKEAMEFLTP ADVAQTVGFL
AALPPRVNLQ QVTIMPTGQP S