| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4578 |
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| Symbol | |
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| ID | 8335932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 5209655 |
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| End bp | 5210914 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644957679 |
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| Product | putative RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003115281 |
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| Protein GI | 256393717 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.638987 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.470788 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCGG CTCAGGACAT CGAAGCCGTC TTCCGTGCCG AGTACGGCCG GGCGGTGGCT
GTCCTGGTGC GCGCTTTCGG CGACATCGAC CTCGCCGAGG AAGCCGTCCA GGACGCCTTC
GCCACCGCCT TGCAACGCTG GCCGGCAGAG GGTCCGCCAC CGTCTCCGGC GGGCTGGATC
ATCACCACGG CCCGCAACCG CGCCATCGAC CGTCTTCGCC GTGAAGCGCG CCGCGAGGAC
CACTATGCCC AAGCGGCGCT GCTGCACGCC GCCACCGATC CCGGCGCCGA TCGCCACCCC
GCCACCGAAT CAGAACAGGA GGACCCGGTG CGCGACGACC GCCTCCGCCT GATCTTCACC
TGCTGCCACC CGGCTCTGGC CGCGCCGACC CGCGTCGCCC TGACTCTGCG CCTGCTCGGC
GGCCTGACCA CCGCCGAGAT CGCCCGCGCG TTCCTGGTCA GCGAGCAGAC CATGTCCCAG
CGCCTGGTGC GCGCGAAGGG CAAGATCCGC GCCGCGCGCA TCCCGTACCG CATCCCCTCA
GAGGCCGAAC TGCCGGACCG GCTGCGCGCC GTGCTCGCCG TCGTCTACCT GATCTTCACC
GAAGGACACT CGGCCACCTC CGGGGAGAAC CTGGTCCGCG CCGACCTGTG TGCCGAGGCG
ATCCGCCTGG CGCGCCTGCT GGTCGAGCTG ATGCCCGACG AACCCGAGGC CGCCGGTCTG
CTCGCGCTGC TCCTGCTCAC CGAGGCACGC CGCCCGGCCC GCGTCGCCCC CGACGGCGCG
CTCATCCTGC TCGGCGACCA GGACCGCGCG CGGTGGGACA GGGCCCTGAT CGAGGAGGGG
CAAGACCTCC TGCGCTCGTG CCTGCGGCGC AACCAACCCG GGCCGTATCA GCTCCAAGCC
GCCATCAACG CCGTCCACAG CGACGCGGCT CGCGCCGAGG ACACCGACTG GCTCCAGATC
CTGACTCTCT ACGACCGGCT GCTGGCCGTC GAGCCGACCC CCGTCGTCGC CCTCAACCGA
GCCGTCGCCC TCGCCGAAGC CCACGGCATC GCCCCAGCGC TGGACGTCAT CGAAGCACTC
GCCACGCCCC TGGCCGAATA CGGTCCCTAC CACGCCGTGC GCGCCGACCT CCTGCGCCGC
GCCGGCCGCC GGAGCGAAGC CGCCGCCGCG TACGAACAAG CCGCGGCGCG CGCCGGGAAC
GCCAGCGAGC GCGCGTTCCT GCTGGCGCGG CGGAGCGCTC TGACCGACTC GCCGGATTGA
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| Protein sequence | MTSAQDIEAV FRAEYGRAVA VLVRAFGDID LAEEAVQDAF ATALQRWPAE GPPPSPAGWI
ITTARNRAID RLRREARRED HYAQAALLHA ATDPGADRHP ATESEQEDPV RDDRLRLIFT
CCHPALAAPT RVALTLRLLG GLTTAEIARA FLVSEQTMSQ RLVRAKGKIR AARIPYRIPS
EAELPDRLRA VLAVVYLIFT EGHSATSGEN LVRADLCAEA IRLARLLVEL MPDEPEAAGL
LALLLLTEAR RPARVAPDGA LILLGDQDRA RWDRALIEEG QDLLRSCLRR NQPGPYQLQA
AINAVHSDAA RAEDTDWLQI LTLYDRLLAV EPTPVVALNR AVALAEAHGI APALDVIEAL
ATPLAEYGPY HAVRADLLRR AGRRSEAAAA YEQAAARAGN ASERAFLLAR RSALTDSPD
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