Gene Caci_4378 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4378 
Symbol 
ID8335732 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4967228 
End bp4967830 
Gene Length603 bp 
Protein Length200 aa 
Translation table11 
GC content68% 
IMG OID644957481 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003115083 
Protein GI256393519 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.136582 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGAGC AGGATCGGAC GAGGGTGCCG CGCGGCGAGG CCAGGGACCG GATCGTCGCC 
GCGGCCACGG AGCTGTTCGG CCGCCAGGGC TACGAGGCCA CGACCACTCG CCAGATCGTC
GAGGCCGCAC AGGTCACCAA GGGCGCGCTG TACCACTGGT TCAGCTCCAA GGAGGAACTG
CTCACCAGCA TCTACCGCGA ACTGCTCGCT GAACAGACTT CACGCCTGAA GACCATCGCC
GCCGCCGACA CCCCCGCCGA CGCCCGCCTG CACCTAGCCG TCACCGACCT CTTCGCGCAC
ATGGACGACC ACGCCGAACC CCTGACCGTC TGGGCCCGCT CCATGCACCT CGTAGCCGGC
GAACACGCCG CCGCCGTCCG CGCCGAACGC CGCCGCTACC AACACCTCTT CCAGGACCTG
ATCGAGGAAG GACAGAAAGC CGGCGTGTTC CGCGCCGACG TAGCCGCCAG CGTCATCACG
AACACATTCC TGAGCAGCGT GGTCCAGATC CACCGCTGGT TCCGCCCCGA CGGCCCACTG
ACGCGCCGAG AGCTGGGCAC GCAGATGGTG GCTCTGTTCC TGGACGGGGT GCGCGTCGGG
TAG
 
Protein sequence
MAEQDRTRVP RGEARDRIVA AATELFGRQG YEATTTRQIV EAAQVTKGAL YHWFSSKEEL 
LTSIYRELLA EQTSRLKTIA AADTPADARL HLAVTDLFAH MDDHAEPLTV WARSMHLVAG
EHAAAVRAER RRYQHLFQDL IEEGQKAGVF RADVAASVIT NTFLSSVVQI HRWFRPDGPL
TRRELGTQMV ALFLDGVRVG