| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4301 |
|---|
| Symbol | |
|---|
| ID | 8335655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4880095 |
|---|
| End bp | 4881192 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644957404 |
|---|
| Product | aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein |
|---|
| Protein accession | YP_003115006 |
|---|
| Protein GI | 256393442 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.389589 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0000586034 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAGAGACA TCAAGACTCT GATTCGTACG GTCGCGGCGG TCGGTGCCGC CCTCGGGATC
GTCGCCTCGG CCGCCGCGTG CGGGTCGTCG AAGAGCTCTG CCTCGAGTAC GAAGGCCGCG
GCCGTCTCCA GCGGCTCGGC CGCCACGCAG GTGCGCCTGG GCTACTTCGC CAACGTCACG
CACGCCACCG CCGTGGTCGG CGTCGCACAC GGCGACTTCG CCAAGGCACT GGGCTCCACC
AAGCTCTCCA CGCAGGTCTA CAACGCCGGA CCCGCCGAGA TGACCGCCGT CCTCGGCGGA
CAACTGGACG CCGCCTACGT CGGACCGTCC TCGGCCCTGT CCGCCTTCGT CCAGTCGCAC
GGCGAGGCCC TGAAGATCGT CGCCGGCGCC ACCGAAGGCG GCGCGGAACT CGTGGTCAAG
CCCTCAATAG CCTCCGCGGC GGACCTCAAG GGCAAGACCC TCGCAACGCC GCAGAAGGGC
AACACCCAGG ACGTGGCCCT CCGCTTCTGG CTCAAGCAGC AGGGCCTGAC CGCCAACCCG
GACGGCTCCG GCGACGTATC GGTGAACCCC CAGGACAACG CCACCACCCT CGACCAGTTC
AAGGCCGGCC ACATCGACGG CGCCTGGCTC CCCGAACCCT GGGCCTCCCG CCTGGTCGAA
GAAGCCGGCG CGAAGGTCCT CGTCGACGAA CGCAGCCTGT GGCCCAACAG CCAGTTCTCC
ACCACCACCC TCGTCGTGGC GACCACCTTC CTGACCAAGC ACCCCGACAC AGTCAGGGCC
CTGATAGACG GCCAAATCGC CGCCAACACC TGGATCACCT CCAACCCCGC CGACGCCCAA
AAACTGGTCA ACAGCGAACT CAAGCGCCTC ACCGGCAAAG CCCTGACCGA CGCCGAAATC
CAGCGCTCCT TCAGCGAACA GAAGGTCACC AACAACCCCG ACGCATCAAC CCTCCAGACC
TCCCTGGACC ACGCAGTCGC AGTCAACCTC CTGAAGTCCA CCGACCTCCA CGGCATCTTC
GACCTCTCGA TCCTCAACGC CGAACTCACC AAGAACGGCC AGCCGACCGT CTCCGACGCC
GGACTGGCAA AGAAGTGA
|
|---|
| Protein sequence | MRDIKTLIRT VAAVGAALGI VASAAACGSS KSSASSTKAA AVSSGSAATQ VRLGYFANVT
HATAVVGVAH GDFAKALGST KLSTQVYNAG PAEMTAVLGG QLDAAYVGPS SALSAFVQSH
GEALKIVAGA TEGGAELVVK PSIASAADLK GKTLATPQKG NTQDVALRFW LKQQGLTANP
DGSGDVSVNP QDNATTLDQF KAGHIDGAWL PEPWASRLVE EAGAKVLVDE RSLWPNSQFS
TTTLVVATTF LTKHPDTVRA LIDGQIAANT WITSNPADAQ KLVNSELKRL TGKALTDAEI
QRSFSEQKVT NNPDASTLQT SLDHAVAVNL LKSTDLHGIF DLSILNAELT KNGQPTVSDA
GLAKK
|
|---|
| |